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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:11:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cpn10.html
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#====================================
# Aligned_structures: 2
#   1: 1aono.pdb
#   2: 1jh2a.pdb
#
# Length:        104
# Identity:       34/104 ( 32.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     34/104 ( 32.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           12/104 ( 11.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aono.pdb               1  --MNIRPLHDRVIVKRKEVETK-SAG--GIVLTGSAAAKS-TRGEVLAVGNGRILE-NGE   53
1jh2a.pdb               1  AKVNIKPLEDKILVQANEAE--TTTASGLVIPDTA-K-EKPQEGTVVAVGPGRWDEDGEK   56
                              NI PL D   V   E E                       G V AVG GR  E    

1aono.pdb              54  VKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA   97
1jh2a.pdb              57  RIPLDVAEGDTVIYSKYG-GTEIKYNGEEYLILSARDVLAVVSK   99
                             PLDV  GD VI          K   EE LI S  D LA V  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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