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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 05:48:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cpn60_TCP1.html
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#====================================
# Aligned_structures: 4
#   1: 1a6db.pdb
#   2: 1ass.pdb
#   3: 1kid.pdb
#   4: 1srva.pdb
#
# Length:        244
# Identity:       10/244 (  4.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     32/244 ( 13.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          129/244 ( 52.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a6db.pdb               1  -------NGIIVDKEKVHPGMP-------DVVKDAKIALLDAPLEIKKPEFDTNLRIE--   44
1ass.pdb                1  ------MSGIVIDKEKVHSKMP-------DVVKNAKIALIDSALEIKKT---------EI   38
1kid.pdb                1  GLVPRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKIS---------------   45
1srva.pdb               1  --------GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVS---------------   37
                                   G   Dk    p           v   a I l d                   

1a6db.pdb              45  -------DPSMIQKFLAQEENMLREMVDKIKSVG----A-NVVITQKGI----DDMAQHY   88
1ass.pdb               39  EAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSG----A-NVVLCQKGI----DDVAQHY   89
1kid.pdb               46  ----------------------NIREMLPVLEAVAKAGKPLL-IIAEDVEGEALATLVVN   82
1srva.pdb              38  ----------------------NVRELLPILEQVAQTGKPLL-IIAEDV----EGEALAT   70
                                                        i             i            a   

1a6db.pdb              89  LSRAG------IYAVRRV-----KKSDMDKLAKATG---ASIV-----STIDEISSSDLG  129
1ass.pdb               90  LAKEG------IYAVRRV-----KKSDMEKLAKATG---AKIV-----TDLDDLTPSVLG  130
1kid.pdb               83  TMRG----IVKVAAVKAPG---FGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLG  135
1srva.pdb              71  LVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTG---GTVISEELGFKLENATLSMLG  127
                           l            AV         k     la  tg              l   t s LG

1a6db.pdb             130  TAERVEQV-KVGEDYMTFVTGCKN------------------------------------  152
1ass.pdb              131  EAETVEER-KIGDDRMTFVMGCK-------------------------------------  152
1kid.pdb              136  QAKRVVINK-----DTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLA  190
1srva.pdb             128  RAERVRITK-----DETTIVGGK-------------------------------------  145
                            AerV           T   g k                                     

1a6db.pdb             153  ---P  153
1ass.pdb                   ----     
1kid.pdb              191  GGV-  193
1srva.pdb                  ----     
                               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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