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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:15:50 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cytochr_c552.html
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#====================================
# Aligned_structures: 2
#   1: 1fs8a.pdb
#   2: 1qdba.pdb
#
# Length:        489
# Identity:      299/489 ( 61.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    299/489 ( 61.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           34/489 (  7.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fs8a.pdb               1  KTAHSQGIEGKAMSEEWARYYPRQFDSWKKTKESDNITDMLKEKPALVVAWAGYPFSKDY   60
1qdba.pdb               1  ------GIAGKEKSEEWAKYYPRQFDSWKKTKEYDSFTDMLAKDPALVIAWSGYAFSKDY   54
                                 GI GK  SEEWA YYPRQFDSWKKTKE D  TDML   PALV AW GY FSKDY

1fs8a.pdb              61  NAPRGHYYALQDNINTLRTGAPVDGKTGPLPSACWTCKSPDVPRIIEQDGELEYFTGKWA  120
1qdba.pdb              55  NSPRGHYYALQDNVNSLRTGAPVDAKTGPLPTACWTCKSPDVPRLIEEDGELEYFTGKWA  114
                           N PRGHYYALQDN N LRTGAPVD KTGPLP ACWTCKSPDVPR IE DGELEYFTGKWA

1fs8a.pdb             121  KYGDEIVNTIGCYNCHDDKSAELKSKVPYLDRGLSAAGFKTFAESTHQEKRSLVCAQCHV  180
1qdba.pdb             115  KYGSQIVNVIGCANCHDDKTAELKVRVPHLNRGLQAAGLKTFEESTHQDKRTLVCAQCHV  174
                           KYG  IVN IGC NCHDDK AELK  VP L RGL AAG KTF ESTHQ KR LVCAQCHV

1fs8a.pdb             181  EYYFKKTEWKDDKGVDKTAMVVTLPWSKGIS-----TEQMEAYYDEINF-ADWTHGISKT  234
1qdba.pdb             175  EYYFKKTEWKDAKGADKTAMVVTLPWANGVGKDGNAGVEGMIKYYDEI-NFSDWTHN-IS  232
                           EYYFKKTEWKD KG DKTAMVVTLPW  G              Y                

1fs8a.pdb             235  -PMLKAQHP-DWELYKTGIHGQKG-VSCADCHMPYTQE----GAVKYSDHK-VGNPLDNM  286
1qdba.pdb             233  KTPMLKAQ-HPGFEFWKSGIHGQKGV-SCADCHM-PYTQEGSVKYSDHQ--VKENPLDSM  287
                                                    V                            NPLD M

1fs8a.pdb             287  DKSCMNCHRESEQKLKDIVKQKFERKEFLQDIAFDNIGKAHLETGKAMELGATDAELKEI  346
1qdba.pdb             288  DQSCMNCHRESESKLRGIVHQKYERKEFLNKVAFDNIGKAHLETGKAIEAGASDEELKEV  347
                           D SCMNCHRESE KL  IV QK ERKEFL   AFDNIGKAHLETGKA E GA D ELKE 

1fs8a.pdb             347  RTHIRHAQWRADMAIAGHGSFFHAPEEVLRLLASGNEEAQKARIKLVKVLAKYGAIDYVA  406
1qdba.pdb             348  RKLIRHGQFKADMAIAAHGNYFHAPEETLRLLAAGSDDAQKARLLLVKILAKHGVMDYIA  407
                           R  IRH Q  ADMAIA HG  FHAPEE LRLLA G   AQKAR  LVK LAK G  DY A

1fs8a.pdb             407  PDFETKEKAQKLAKVDMEAFIAEKLKFKQTLEQEWKKQAIAKGRLNPESLKGVDEKSSYY  466
1qdba.pdb             408  PDFDTKDKAQKLAKVDIAALAAEKMKFKQTLEQEWKKEAKAKGRANPELYKDVDTINDGK  467
                           PDF TK KAQKLAKVD  A  AEK KFKQTLEQEWKK A AKGR NPE  K VD      

1fs8a.pdb             467  DKTKK----  471
1qdba.pdb             468  SS---WNKK  473
                                    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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