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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:16:57 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cytochrome_b.html
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#====================================
# Aligned_structures: 2
#   1: 1bccc.pdb
#   2: 1bgyc.pdb
#
# Length:        380
# Identity:      273/380 ( 71.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    273/380 ( 71.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            2/380 (  0.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bccc.pdb               1  -APNIRKSHPLLKMINNSLIDLPAPSNISAWWNFGSLLAVCLMTQILTGLLLAMHYTADT   59
1bgyc.pdb               1  MTNIRKSHPLMKIVNN-AFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDT   59
                                          N   IDLPAPSNIS WWNFGSLL  CL  QILTGL LAMHYT DT

1bccc.pdb              60  SLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIFLHIGRGLYYGSYLYKETWNTGVIL  119
1bgyc.pdb              60  TTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTFLETWNIGVIL  119
                             AFSSV H CR V YGW IR  HANGAS FFIC   H GRGLYYGSY   ETWN GVIL

1bccc.pdb             120  LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFF  179
1bgyc.pdb             120  LLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFF  179
                           LLT MATAF GYVLPWGQMSFWGATVITNL SAIPYIG  LVEW WGGFSVD  TLTRFF

1bccc.pdb             180  ALHFLLPFAIAGITIIHLTFLHESGSNNPLGISSDSDKIPFHPYYSFKDILGLTLMLTPF  239
1bgyc.pdb             180  AFHFILPFIIMAIAMVHLLFLHETGSNNPTGISSDVDKIPFHPYYTIKDILGALLLILAL  239
                           A HF LPF I  I   HL FLHE GSNNP GISSD DKIPFHPYY  KDILG  L     

1bccc.pdb             240  LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVL  299
1bgyc.pdb             240  MLLVLFAPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSIL  299
                             L LF P LLGDP N TPANPL TPPHIKPEWYFLFAYAILRSIPNKLGGVLALA S L

1bccc.pdb             300  ILFLIPFLHKSKQRTMTFRPLSQTLFWLLVANLLILTWIGSQPVEHPFIIIGQMASLSYF  359
1bgyc.pdb             300  ILALIPLLHTSKQRSMMFRPLSQCLFWALVADLLTLTWIGGQPVEHPYITIGQLASVLYF  359
                           IL LIP LH SKQR M FRPLSQ LFW LVA LL LTWIG QPVEHP I IGQ AS  YF

1bccc.pdb             360  TILLILFPTIGTLENKMLNY  379
1bgyc.pdb             360  LLILVLMPTAGTIENKLLKW  379
                              L L PT GT ENK L  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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