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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:59:59 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ech.html
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#====================================
# Aligned_structures: 3
#   1: 1dcia.pdb
#   2: 1nzya.pdb
#   3: 2duba.pdb
#
# Length:        283
# Identity:       38/283 ( 13.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    119/283 ( 42.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           38/283 ( 13.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dcia.pdb               1  AYESIQVTSAQ--KHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG   58
1nzya.pdb               1  MYEAIGHRV-E--DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE   57
2duba.pdb               1  NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE   60
                            ye I          V  iqlnrP  rNAl      El  al   eeD  vgAvv tGae

1dcia.pdb              59  KMFTSGIDLMDMASDILQPPGDDVARIAWYLRD-LISRYQKTFTVIEKCPKPVIAAIHGG  117
1nzya.pdb              58  DAFCAGFYLREIP------LDK-GVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGV  110
2duba.pdb              61  KAFAAGADIKEMQNRT------------FQDCYS-------HWDHITRIKKPVIAAVNGY  101
                           kaF aG dl em                                 I r kkPViAAinG 

1dcia.pdb             118  CIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTAR  177
1nzya.pdb             111  AAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVG-MRRAMELMLTNR  169
2duba.pdb             102  ALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVG-KSLAMEMVLTGD  160
                           a GGG  l  acDi yc   A F   e   G   d gt qrL r vG  slamEl lT r

1dcia.pdb             178  KMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDES  237
1nzya.pdb             170  TLYPEEAKDWGLVSRVYPKD-EFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEEC  228
2duba.pdb             161  RISAQDAKQAGLVSKIFPVE-TLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEG  219
                              a eAkd GLVSrvfP      e A   A  ia  s   v maKe   a     v E 

1dcia.pdb             238  LDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITF---SK--L  275
1nzya.pdb             229  TEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQ-VELP-AGV  269
2duba.pdb             220  NKLEKKLFYSTFATDDRREGMSAFVEKR---KANF---KD--H  254
                              e     s   t d      af ek                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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