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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:42:30 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/endotoxin.html
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#====================================
# Aligned_structures: 2
#   1: 1ciy.pdb
#   2: 1dlc.pdb
#
# Length:        610
# Identity:      191/610 ( 31.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    191/610 ( 31.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           59/610 (  9.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ciy.pdb                1  Y---TPIDISLSLTQFLLSEFV-P----GAGFVLGLVDIIWGIFGPSQWDAFLVQIEQLI   52
1dlc.pdb                1  -TTKDVIQKGISVVGDLLGVVGFPFGGALVSFYTNFLNTI--WPSEDPWKAFMEQVEALM   57
                                 I    S    LL     P       F       I        W AF  Q E L 

1ciy.pdb               53  NQRIEEFARNQAISRLEGLSNLYQIYAESFREWEAD---PTNPALREEMRIQFNDMNSAL  109
1dlc.pdb               58  DQKIADYAKNKALAELQGLQNNVEDYVSALSSWQKNPVSSRNPHSQGRIRELFSQAESHF  117
                            Q I   A N A   L GL N    Y      W        NP      R  F    S  

1ciy.pdb              110  TTAIPLLAVQNYQVPLLSVYVQAANLHLSVLRDVSVFGQRWGFDAATINSRYNDLTRLIG  169
1dlc.pdb              118  RNSMPSFAISGYEVLFLTTYAQAANTHLFLLKDAQIYGEEWGYEKEDIAEFYKRQLKLTQ  177
                               P  A   Y V  L  Y QAAN HL  L D    G  WG     I   Y     L  

1ciy.pdb              170  NYTDYAVRWYNTGLERVWGPDSRDWVRYNQFRRELTLTVLDIVALFSNYDSRRYPIRTVS  229
1dlc.pdb              178  EYTDHCVKWYNVGLDKLRGSSYESWVNFNRYRREMTLTVLDLIALFPLYDVRLYPKEVKT  237
                            YTD  V WYN GL    G     WV  N  RRE TLTVLD  ALF  YD R YP     

1ciy.pdb              230  QLTREIYTNPVL--ENFDGSFRG---MAQRIEQNIRQPHLMDILNSITIYTDVHR-----  279
1dlc.pdb              238  ELTRDVLTD---PIVGVNNLRG-YGTTFSNIENYIRKPHLFDYLHRIQFHTRFQPGYYGN  293
                            LTR   T                      IE  IR PHL D L  I   T         

1ciy.pdb              280  -GFNYWSGHQITASPVGFSGPEFAFPLFGNAGNAAPPVLVSLTGL--GIFRTLSSPLYRR  336
1dlc.pdb              294  DSFNYWSGNYVSTRPSIGSNDIITSPFYGNKSS-EPVQNLEFN--GEKVYRAVANTNLAV  350
                             FNYWSG      P   S      P  GN     P              R         

1ciy.pdb              337  IILGSGPNNQELFVLDGTEFSFAS-L-TTNLPSTIYRQR-------GTVDSLDVIPPQDN  387
1dlc.pdb              351  WPS------AVYSGVTKVEFSQYNDQTDE-ASTQTYD--SKRNVGAVSWDSIDQLPPETT  401
                                             EFS              Y             DS D  PP   

1ciy.pdb              388  SVPPRAGFSHRLSHVTMLSQAAGAVYTLRAPTFSWQHRSAEFNNIIPSSQITQIPLTKST  447
1dlc.pdb              402  DEPLEKGYSHQLNYVMCFLMQG-S--RGTIPVLTWTHKSVDFFNMIDSKKITQLPLVKAY  458
                             P   G SH L  V               P   W H S  F N I S  ITQ PL K  

1ciy.pdb              448  NLGSGTSVVKGPGFTGGDILRRTSPGQISTLRVNITAPLSQRYRVRIRYASTTNLQFHTS  507
1dlc.pdb              459  KLQSGASVVAGPRFTGGDIIQCTENGSAATIYVTPDVSYSQKYRARIHYASTSQITFTLS  518
                            L SG SVV GP FTGGDI   T  G   T  V      SQ YR RI YAST    F  S

1ciy.pdb              508  IDGRPINQGNFSATMSSGSNLQSGSFRTVGFTTPFNFSNGSSVFTLSAHVFNSGNEVYID  567
1dlc.pdb              519  LDGAPFNQYYFDKTINKGDTLTYNSFNLASFSTPFELSGNN-L-QIGVTGLSAGDKVYID  576
                            DG P NQ  F  T   G  L   SF    F TPF  S               G  VYID

1ciy.pdb              568  RIEFVPAEVT  577
1dlc.pdb              577  KIEFIPVN--  584
                            IEF P    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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