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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 01:27:55 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/fer2.html
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#====================================
# Aligned_structures: 13
#   1: 1a70.pdb
#   2: 1awd.pdb
#   3: 1ayfa.pdb
#   4: 1b9ra.pdb
#   5: 1doy.pdb
#   6: 1frd.pdb
#   7: 1frra.pdb
#   8: 1fxaa.pdb
#   9: 1fxia.pdb
#  10: 1pdxa.pdb
#  11: 1pfd.pdb
#  12: 2cjo.pdb
#  13: 4fxc.pdb
#
# Length:        141
# Identity:        4/141 (  2.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      7/141 (  5.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           75/141 ( 53.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a70.pdb                1  A---AYKVTLVT--PT-GNVEFQCPDD-VYI-LDAAEEEGID-LPY-----S-CRAGSCS   45
1awd.pdb                1  -----YKVTLKT--PS-GEETIECPED-TYI-LDAAEEAGLD-LPY-----S-CRAGACS   43
1ayfa.pdb               1  ----KITVHFIN--RDGETLTTKGKIG-DSL-LDVVVQNNLD-IDGF---GACEGTLACS   48
1b9ra.pdb               1  -----PRVVFID--EQSGEYAVDAQDG-QSL-MEVATQNGVP-GIV----AECGGSCVCA   46
1doy.pdb                1  -ASY--TVKL-I--TPDGESSIECSDDT--YILDAAEEAGLDL------PYSC-RAGACS   45
1frd.pdb                1  A---SYQVRLINKKQD-IDTTIEIDEE-TTI-LDGAEENGIE-LPF-----S-CHSGSCS   47
1frra.pdb               1  ----AYKTVLKT--PS-GEFTLDVPEG-TTI-LDAAEEAGYD-LPF-----S-CRAGACS   44
1fxaa.pdb               1  A---TFKVTLINE-AEGTKHEIEVPDD-EYI-LDAAEEQGYD-LPF-----S-CRAGACS   47
1fxia.pdb               1  A---SYKVTLKT--PD-GDNVITVPDD-EYI-LDVAEEEGLD-LPY-----S-CRAGACS   45
1pdxa.pdb               1  -----SKVVYVS--HDGTRRELDVADG-VSL-MQAAVSNGIY-----DIVGDCGGSASCA   46
1pfd.pdb                1  A---TYNVKLIT--PD-GEVEFKCDDD-VYV-LDQAEEEGID-IPY-----S-CRAGSCS   45
2cjo.pdb                1  A---TYKVTLVRP-DG-SETTIDVPED-EYI-LDVAEEQGLD-LPF-----S-CRAGACS   46
4fxc.pdb                1  A---TYKVTLINEAEG-INETIDCDDD-TYI-LDAAEEAGLD-LPY-----S-CRAGACS   47
                                  v                           a   g                  C 

1a70.pdb               46  SCAGKL-KTGS-LNQD---DQSFLDD--DQID-------------EGW--VLTCAAYPV-   82
1awd.pdb               44  SCAGKV-ESGE-VDQS---DQSFLDD--AQMG-------------KGF--VLTCVAYPT-   80
1ayfa.pdb              49  TCHLIF-EQH------IFEKLEAITD--EENDM-LD--LAYG-LTDRS--RLGCQICLTK   93
1b9ra.pdb              47  TCRIEI-EDA------WVEIVGEANP--DENDLLQS--T-GEPMTAGT--RLSCQVFIDP   92
1doy.pdb               46  TCAGKIT------------AGSVDQSDQ-------SFL--DD-DQIEAGYVLTCVAYPT-   82
1frd.pdb               48  SCVGKV-VEGE-VDQS---DQIFLDD--EQMG-------------KGF--ALLCVTYPR-   84
1frra.pdb              45  SCLGKV-VSGS-VDES---EGSFLDD--GQME-------------EGF--VLTCIAIPE-   81
1fxaa.pdb              48  TCAGKL-VSGT-VDQS---DQSFLDD--DQIE-------------AGY--VLTCVAYPT-   84
1fxia.pdb              46  TCAGKL-VSGPAPDED---QSFLDD---DQIQ-------------AGY--ILTCVAYPT-   82
1pdxa.pdb              47  TCHVYV-NEA------FTDKVPAANE--REIGM-LE--CVTAELKPNS--RLCCQIIMTP   92
1pfd.pdb               46  SCAGKV-VSGS-IDQS---DQSFLDD--EQMD-------------AGY--VLTCHAYPT-   82
2cjo.pdb               47  TCAGKL-LEGE-VDQS---DQSFLDD--DQIE-------------KGF--VLTCVAYPR-   83
4fxc.pdb               48  TCAGTI-TSGT-IDQS---DQSFLDD--DQIE-------------AGY--VLTCVAYPT-   84
                            C                                                 L C      

1a70.pdb               83  -SD-VTIETHKKEELT----A   97
1awd.pdb               81  -SD-VTILTHQEAALY-----   94
1ayfa.pdb              94  AMDNMTVRVP-----------  103
1b9ra.pdb              93  SMDGLIVRVP------LPA--  105
1doy.pdb               83  --SDCTIETHKEEDL----Y-   96
1frd.pdb               85  -SN-CTIKTHQEPYLA-----   98
1frra.pdb              82  -SD-LVIETHKEEELF-----   95
1fxaa.pdb              85  -SD-VVIQTHKEEDLY-----   98
1fxia.pdb              83  -GD-CVIETHKEEALY-----   96
1pdxa.pdb              93  ELDGIVVDVP------DRQW-  106
1pfd.pdb               83  -SD-VVIETHKEEEIV-----   96
2cjo.pdb               84  -SD-CKILTNQEEELY-----   97
4fxc.pdb               85  -SD-CTIKTHQEEGLY-----   98
                                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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