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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:56:28 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/fer4_NifH.html
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#====================================
# Aligned_structures: 2
#   1: 1cp2a.pdb
#   2: 2nipa.pdb
#
# Length:        287
# Identity:      187/287 ( 65.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    187/287 ( 65.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           19/287 (  6.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cp2a.pdb               1  -MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDT   59
2nipa.pdb               1  AMRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEM   60
                            MRQ AIYGKGGIGKSTTTQNL   L  MGK  M VGCDPKADSTRL L   AQ      

1cp2a.pdb              60  LREE-GE--DVELDSILKEGYGGIRCVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDL  116
2nipa.pdb              61  AAEAGT-VEDLELEDVLKAGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDL  119
                             E      D EL   LK GYGG  CVESGGPEPGVGCAGRG IT IN LE  GAY DDL

1cp2a.pdb             117  DYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRL  176
2nipa.pdb             120  DFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRL  179
                           D VFYDVLGDVVCGGFAMPIRE KAQEIYIV SGEMMA YAANNISKGI KYA SG VRL

1cp2a.pdb             177  GGIICNSRKVANEYELLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIEYDPTCEQAEE  236
2nipa.pdb             180  GGLICNSRNTDREDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADE  239
                           GG ICNSR    E EL  A A  LG Q IHFVPR   V  AEI   TVIEYDP   QA E

1cp2a.pdb             237  YRELARKVDANELFVIPKPMTQERLEEILMQYG--------------  269
2nipa.pdb             240  YRALARKVVDNKLLVIPNPITMDELEELLMEFGIMEVEDESIVGKTA  286
                           YR LARKV  N L VIP P T   LEE LM  G              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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