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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 14:19:08 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/flav.html
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#====================================
# Aligned_structures: 6
#   1: 1ag9a.pdb
#   2: 1akr.pdb
#   3: 1flv.pdb
#   4: 1ofv.pdb
#   5: 2fcr.pdb
#   6: 5nll.pdb
#
# Length:        199
# Identity:       13/199 (  6.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     27/199 ( 13.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           76/199 ( 38.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ag9a.pdb               1  A-ITGIFFGSDTGNTENIAKMIQKQLG-K---DVADVHDIAKS-SKE-DLEAYDILLLGI   53
1akr.pdb                1  -PKALIVYGSTTGNTEYTAETIARELA--DAGYEVDSRDAASV-EAGGLFEGFDLVLLGC   56
1flv.pdb                1  K-KIGLFYGTQTGKTESVAEIIRDEFG-N---DVVTLHDVSQA-EVT-DLNDYQYLIIGC   53
1ofv.pdb                1  A-KIGLFYGTQTGVTQTIAESIQQEFGGE---SIVDLNDIANA-DAS-DLNAYDYLIIGC   54
2fcr.pdb                1  --KIGIFFSTSTGNTTEVADFIGKTLG-A---KADAPIDVDDVTDPQ-ALKDYDLLFLGA   53
5nll.pdb                1  ---MKIVYWSGTGNTEKMAELIAKGII--ESGKDVNTINVSDV-NIDELL-NEDILILGC   53
                                      TG T   A  I                d          l   d l  G 

1ag9a.pdb              54  PTW-Y------------YGEAQC-DWDDFFPTL-EEIDFNGKLVALFGCGDQEDYAEYFC   98
1akr.pdb               57  STW-A-DDSIELQDDFI-------PLFDSLEET----GAQGRKVACFGCGDSSY--EYFC  101
1flv.pdb               54  PTW-N------------IGELQS-DWEGLYSEL-DDVDFNGKLVAYFGTGDQIGYADNFQ   98
1ofv.pdb               55  PTW-N------------VGELQS-DWEGIYDDL-DSVNFQGKKVAYFGAGDQVGYSDNFQ   99
2fcr.pdb               54  PTWNTGADTERSG---T-------SWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFC  103
5nll.pdb               54  SAM-G------------DEVLEESEFEPFIEEIST--KISGKKVALFGSYGW-G----DG   93
                            tw                                     g  VA FG gd       f 

1ag9a.pdb              99  DALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPE--LTAERV  156
1akr.pdb              102  GAVDAIEEKLKNLGAEIVQD---------------------GLRIDG-D---PRAARDDI  136
1flv.pdb               99  DAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGK-FVGLALDEDNQSD--LTDDRI  155
1ofv.pdb              100  DAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQ-FVGLAIDEDNQPD--LTKNRI  156
2fcr.pdb              104  DAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGK-FLGLPLDMVNDQI--PMEKRV  160
5nll.pdb               94  KWMRDFEERMNGYGCVVVET---------------------PLIVQN-E---PDEAEQDC  128
                            a           G   V                       gL  d              

1ag9a.pdb             157  EKWVKQISEELHLDEILNA  175
1akr.pdb              137  VGWAHDVRGAI--------  147
1flv.pdb              156  KSWVAQLKSEFGL------  168
1ofv.pdb              157  KTWVSQLKSEFGL------  169
2fcr.pdb              161  AGWVEAVVSETGV------  173
5nll.pdb              129  IEFGKKIANI---------  138
                             w                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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