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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 02:37:42 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/fn3.html
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#====================================
# Aligned_structures: 14
#   1: 1boy1.pdb
#   2: 1boy2.pdb
#   3: 1cfb1.pdb
#   4: 1cfb2.pdb
#   5: 1cto.pdb
#   6: 1ebpa1.pdb
#   7: 1ebpa2.pdb
#   8: 1fnf1.pdb
#   9: 1fnf2.pdb
#  10: 1fnf3.pdb
#  11: 1fnf4.pdb
#  12: 1ten.pdb
#  13: 3hhrb1.pdb
#  14: 3hhrb2.pdb
#
# Length:        195
# Identity:        0/195 (  0.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      2/195 (  1.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          139/195 ( 71.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1boy1.pdb               1  T----T----NTV---AA-YNLTWKS-T------------NFKTILEWEP---K---P--   27
1boy2.pdb               1  -----NL---GQP---TI-QSFEQVG---------------TKVNVTVEDER-T--LVRR   30
1cfb1.pdb               1  -IVQDVP---NAP---K--LTGITCQ--------------ADKAEIHWEQQGDNRS----   33
1cfb2.pdb               1  ---PDVP---FKNP-DN--VVGQGTE--------------PNNLVISWTPMP-E--I---   31
1cto.pdb                1  -------GS-SLE----PP-MLQALDIGP-DVVSH----QPGCLWLSWKPWK----P---   35
1ebpa1.pdb              1  -------------GPEE--LLCFTER--------------LEDLVCFWEEA-AS------   24
1ebpa2.pdb              1  ---------VLLD---AP-VGLVARLAD-----------ESGHVVLRWLPPP----E---   29
1fnf1.pdb               1  ----------PLS---PP-TNLHLEA-N------P----DTGVLTVSWERST----T---   28
1fnf2.pdb               1  -----------VP---PP-TDLRFTNIG------------PDTMRVTWAPPP----S---   26
1fnf3.pdb               1  -----------LD---SP-TGIDFSDIT------------ANSFTVHWIAPR----A---   26
1fnf4.pdb               1  ------V----SD---VP-RDLEVVAAT------------PTSLLISWDAPA----V---   27
1ten.pdb                1  -----------LD---AP-SQIEVKDVT------------DTTALITWFKPL----A---   26
3hhrb1.pdb              1  --------------EPKF-TKCRSPE--------------RETFSCHWTDE-V-------   23
3hhrb2.pdb              1  -----------PD---PP-IALNWTLLNVS----LTGIH--ADIQVRWEAPR----N---   32
                                                                          w            

1boy1.pdb              28  --------------V--N---QVYTVQISTKS---G--D-WKSKCFYT---T--------   51
1boy2.pdb              31  NNTFLSLRDV-F-GK--D---LIYTLYYWKSS---S--SGKKT--AKT---N--------   65
1cfb1.pdb              34  ----------P---------ILHYTIQFNTSF---T-PASWDAAYEKV---P-----NT-   61
1cfb2.pdb              32  ----------EH-NAP-N---FHYYVSWKRDI---P-AAAWENNN-IF---D-----WR-   62
1cto.pdb               36  --------SE---YM--E---QECELRYQPQL--KG--ANWTLVF-HL---P-----SS-   65
1ebpa1.pdb             25  --------------AGVGPG--NYSFSYQLE----D--EPWKLCR-LHQAPTARGAV---   58
1ebpa2.pdb             30  --------TP-M-TS--H---IRYEVDVSAGN--GA--GSVQRVE-I----L-----EG-   59
1fnf1.pdb              29  --------P-D------I---TGYRITTTPTN---GQQGNSLEEV-V----H-----AD-   56
1fnf2.pdb              27  --------I-D------L---TNFLVRYSPVK---N-EEDVAELS-I----S-----PS-   53
1fnf3.pdb              27  ----------T------I---TGYRIRHHPEH---F-SGRPREDR-V----P-----HS-   52
1fnf4.pdb              28  ----------T------V---RYYRITYGETG---G-NSPVQEFT-V----P-----GS-   53
1ten.pdb               27  ----------E------I---DGIELTYGIKD---V-PGDRTTID-L----T-----ED-   52
3hhrb1.pdb             24  --------------------HGPIQLFYTRRNEW-T--QEWKECP-D----------YVS   49
3hhrb2.pdb             33  --------AD-IQKGWMV---LEYELQYKEVN---E--TKWKMMD-PI----------L-   63
                                                                                       

1boy1.pdb              52  --DTECDLTDEIV-KD--VKQTYLARVFSYP-AGNV--EST---GSAGEP-LYE-NSPEF   98
1boy2.pdb              66  --TNEFLI----D-VD--KGENYCFSVQAVI-P---S-RTV---N----R-KST-DSPVE  102
1cfb1.pdb              62  --DSSFVVQ-----MS--PWANYTFRVIAFN-K-----------I----G--ASPPSAHS   94
1cfb2.pdb              63  --QNNIVIA---D-QP--TFVKYLIKVVAIN-D-----------R----GESNV-AAEEV   97
1cto.pdb               66  --KDQFELC---G-LHQA--PVYTLQMRCIR-SS----L----PG----F--WSPWSPGL  102
1ebpa1.pdb             59  --RFWCSLPT--ADTS--SFVPLELRVTAAS-------------------GA---PRYHR   90
1ebpa2.pdb             60  --RTECVLS---N-LR--GRTRYTFAVRARM-AE---PS--F-GG----F--WSAWSEPV   98
1fnf1.pdb              57  --QSSCTFD---N-LS--PGLEYNVSVYTVK-D-----------D----K--ES-VPISD   89
1fnf2.pdb              54  --DNAVVLT---N-LL--PGTEYVVSVSSVY-E-----------Q----H--ES-TPLRG   86
1fnf3.pdb              53  --RNSITLT---N-LT--PGTEYVVSIVALN-G-----------R----E--ES-PLLIG   85
1fnf4.pdb              54  --KSTATIS---G-LK--PGVDYTITVYAVTGR------G--DSP----A--SS-KPISI   90
1ten.pdb               53  --ENQYSIG---N-LK--PDTEYEVSLISRR-G-----------D----M--SS-NPAKE   85
3hhrb1.pdb             50  AGENSCYFNS--SFTS--IWIPYCIKLTSN--------------------GG---TVDEK   82
3hhrb2.pdb             64  --TTSVPVY---S-LK--VDKEYEVRVRSKQ-RN---------SG----N--YGEFSEVL   99
                                                 y                                     

1boy1.pdb              99  TPY---L--ET----  104
1boy2.pdb             103  CMG---Q----E---  107
1cfb1.pdb              95  DSCTTQ---------  100
1cfb2.pdb              98  VGYS-GEDR------  105
1cto.pdb              103  QLRP-T-------MK  109
1ebpa1.pdb             91  VIHI-NE--V-----   97
1ebpa2.pdb             99  SLLT-----------  102
1fnf1.pdb              90  TIIP-A---------   94
1fnf2.pdb              87  RQKT-G---------   91
1fnf3.pdb              86  QQST-----------   89
1fnf4.pdb              91  NYRT-----------   94
1ten.pdb               86  TFTT-----------   89
3hhrb1.pdb             83  CFSV-DE--IV-Q--   91
3hhrb2.pdb            100  YVTL-P---------  104
                                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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