################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 20:00:07 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/formyl_transf.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1fmta.pdb # 2: 2gar.pdb # # Length: 226 # Identity: 29/226 ( 12.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 29/226 ( 12.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 64/226 ( 28.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1fmta.pdb 1 SESLRIIFAGTPDFAARHLDALLSSG------HNVVGVFT-QPDRPLMPSPVKVLAEEKG 53 2gar.pdb 1 ---MNIVVLISGN--GSNLQAIIDACKTNKIKGTVRAVFSNK-----ADAFGLERARQAG 50 I L A V VF A G 1fmta.pdb 54 LPVFQPV-SL-R-----PQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGS 106 2gar.pdb 51 IATHTLIASAFDSREAYDRALIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPS 110 S DV V IL A N H S 1fmta.pdb 107 LLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLA 166 2gar.pdb 111 ---------------------HGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQ 149 G LD G P A D 1fmta.pdb 167 ELGPQGLITTLKQLADGTAKPEV----------QDETLVTYAEK-- 200 2gar.pdb 150 TQEHAIYPLVISWFADGRLKMHENAAWLDGQRLPPQ-G------YA 188 ADG K #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################