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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:07:18 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/galpha.html
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#====================================
# Aligned_structures: 3
#   1: 1cjvc.pdb
#   2: 1gia.pdb
#   3: 1tag.pdb
#
# Length:        342
# Identity:      114/342 ( 33.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    234/342 ( 68.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           44/342 ( 12.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cjvc.pdb               1  -ATHRLLLLGAGESGKSTIVKQMRILHV------EKATKVQDIKNNLKEAIETIVAAMSN   53
1gia.pdb                1  ---VKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGR   57
1tag.pdb                1  ARTVKLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTT   60
                              vkLLLLGAGESGKSTIVKQMkIiH       Ec    a iy Nt qsI aIvrAM  

1cjvc.pdb              54  LVPPVELANPENQFRVDYILSVMNVP-DFDFPPEFYEHAKALWEDEGVRACYERSNEYQL  112
1gia.pdb               58  L--KIDFGDAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQL  115
1tag.pdb               61  L--NIQYGDSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQL  118
                           L   i  gd arqddar l   a    eg mp E    ikrLWkDsGvqACf Rs EYQL

1cjvc.pdb             113  IDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDER  172
1gia.pdb              116  NDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSER  175
1tag.pdb              119  NDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQ-RSE  177
                           nDsA YyL dldri qp YvPt QDvLR RVkTtGI ET F fkdlnF MFDVGGQ  er

1cjvc.pdb             173  RK-WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF  231
1gia.pdb              176  KK-WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF  234
1tag.pdb              178  RKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLF  237
                           rK WIhCFegVTaIIF vAlS YdmVl ED e NRmhEsl LF SIcNnrwf ttSiiLF

1cjvc.pdb             232  LNKQDLLAEKVLAGKS-KIEDYFPEFARYTTPEDATPEPGEDP---RVTRAKYFIRDEFL  287
1gia.pdb              235  LNKKDLFEEKIK-K--SPLTICYPEYA----------------GSNTYEEAAAYIQCQFE  275
1tag.pdb              238  LNKKDVFSEKIK-K--AHLSICFPDYN----------------GPNTYEDAGNYIKVQFL  278
                           LNKkDlf EKik k    l icfPeya                   tye A  yI  qFl

1cjvc.pdb             288  RISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL  329
1gia.pdb              276  DLNK--RKDTKEIYTHFTCATDTKNVQFVFDAVTDVI-----  310
1tag.pdb              279  ELNM--RRDVKEIYSHMTCATDTQNVKFVFDAVTDIII----  314
                            ln   r d keiY HfTCAtDT Nv fVFdavtDiI     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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