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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:54:05 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf1.html
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#====================================
# Aligned_structures: 5
# 1: 1bgga.pdb
# 2: 1cbg.pdb
# 3: 1gowa.pdb
# 4: 1pbga.pdb
# 5: 2myr.pdb
#
# Length: 611
# Identity: 50/611 ( 8.2%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 109/611 ( 17.8%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 225/611 ( 36.8%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1bgga.pdb 1 TIF----------------------QFPQDFMWGTATAAYQIEGAYQEDGRG--LSIWDT 36
1cbg.pdb 1 ---FKPLP-ISFDDF----SDLNRSCFAPGFVFGTASSAFQYEGAAFEDGKG--PSIWDT 50
1gowa.pdb 1 -MY----------------------SFPNSFRFGWSQAGFQSEM--GTPGSEDPNTDWYK 35
1pbga.pdb 1 MTK----------------------TLPKDFIFGGATAAYQAEGATHTDGKG--PVAWDK 36
2myr.pdb 1 ---EITCQENN-PFTCGNTDGLNSSSFEADFIFGVASSAYQIEG-T-IG-RG--LNIWDG 51
f F fG a a Q Eg g Wd
1bgga.pdb 37 FAHT--PG-KV--F-NGDNGNVACDSYHRYEEDIRLMKELGIRTYRFSVSWPRIFPNGD- 89
1cbg.pdb 51 FTHKY-PE-KI--K-DRTNGDVAIDEYHRYKEDIGIMKDMNLDAYRFSISWPRVLPKGKL 105
1gowa.pdb 36 WVHDPEN--MAAGLVSGDLPENGPGYWGNYKTFHDNAQKMGLKIARLNSEWSRQFPNPL- 92
1pbga.pdb 37 YLED--N--------YWYTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGY- 85
2myr.pdb 52 FTHRY-PDKSG--P-DHGNGDTTCDSFSYWQKDIDVLDELNATGYRFSIAWSRIIPRGKR 107
h d y d R s W R P g
1bgga.pdb 90 -----------------------------GEVNQEGLDYYHRVVDLLNDNGIEPFCTLYH 120
1cbg.pdb 106 S----------------------------GGVNREGINYYNNLINEVLANGMQPYVTLFH 137
1gowa.pdb 93 -PRPQNFDESKQDVTEVEINENELKRLDE-YANKDALNHYREIFKDLKSRGLYFIQNMYH 150
1pbga.pdb 86 -----------------------------GEVNEKGVEFYHKLFAECHKRHVEPFVTLHH 116
2myr.pdb 108 S----------------------------RGVNQKGIDYYHGLIDGLIKKGITPFVTLFH 139
vN g Y g p tl H
1bgga.pdb 121 WDLPQALQ------------D-AGGWGNRRTIQAFVQFAETMFREFHGKIQHWLTFNEPW 167
1cbg.pdb 138 WDVPQALE------------DEYRGFLGRNIVDDFRDYAELCFKEFGDRVKHWITLNEPW 185
1gowa.pdb 151 WPLPLWLHDPIRVRRGDFTGP--SGWLSTRTVYEFARFSAYTAWKFDDLVDEYSTMNEPN 208
1pbga.pdb 117 FDTPEALH------------S-NGDFLNRENIEHFIDYAAFCFEEF-PEVNYWTTFNEIG 162
2myr.pdb 140 WDLPQTLQ------------DEYEGFLDPQIIDDFKDYADLCFEEFGDSVKYWLTINQLY 187
wd P L g l F a f eF v w T Ne
1bgga.pdb 168 CIAFLSNMLGVH--APGLT------------NLQTAIDVGHHLLVAHGLSVRRFREL-G- 211
1cbg.pdb 186 GVSMNAYAYGTF--APGRCSDWLKLNCTGGDSGREPYLAAHYQLLAHAAAARLYKTKYQA 243
1gowa.pdb 209 VVGGLGYVGVKSGFPPGY-----------L-SFELSRRAMYNIIQAHARAYDGIKSV--- 253
1pbga.pdb 163 PIGDGQYLVGKF--PPGIK----------Y-DLAKVFQSHHNMMVSHARAVKLYKDK-G- 207
2myr.pdb 188 SVPTRGYGSALD--APGRCSPTVDPSCYAGNSSTEPYIVAHHQLLAHAKVVDLYRKNYTH 245
y PG h aHa
1bgga.pdb 212 -TSGQIGIAPNVSWAVPYS-TSEEDKAACARTISLHSDWFLQPIYQGSYPQFLVDW---F 266
1cbg.pdb 244 SQNGIIGITLVSHWFEPAS-KEKADVDAAKRGLDFMLGWFMHPLTKGRYPESMRYL---V 299
1gowa.pdb 254 -SKKPVGIIYANSSFQPLT-DK--DMEAVEMAENDNRWWFFDAIIRGEITRGN------- 302
1pbga.pdb 208 -YKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHI 266
2myr.pdb 246 QGGKIGPTMITRWFLPYND-TDRHSIAATERMKQFFLGWFMGPLTNGTYPQIMIDT---V 301
g p d A wf G y
1bgga.pdb 267 A-EQGATVPIQDGDMDII---GEPIDMIGINYYSMSVNRFNPEA----------GF---- 308
1cbg.pdb 300 R--K-RLPKFSTEESKEL---TGSFDFLGLNYYSSYYAAKAPR-IPNAR-PAIQTD---- 347
1gowa.pdb 303 ------EKIV----RDDL---KGRLDWIGVNYYTRTVVKR-----------------TEK 332
1pbga.pdb 267 LAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDG-----E-TEIIKYQIK- 319
2myr.pdb 302 G--A-RLPTFSPEETNLV---KGSYDFLGLNYYFTQYAQPSPN-PVNATNHTAMMD---- 350
D G NYY
1bgga.pdb 309 LQSEEIN-----M-----------GLP---VTD---I-G-WPVESRGLYEVLHYLQK-YG 343
1cbg.pdb 348 SLINATF-----E----H--NGKPLGP---MAA--SS-W-LCIYPQGIRKLLLYVKNHYN 389
1gowa.pdb 333 GYVSLGGYGHGCERNSVSL---A-GLP---TSD---F-G-WEFFPEGLYDVLTKYWNRY- 379
1pbga.pdb 320 GVGRRVA-----PDYVP----------------------RWIIYPEGLYDQIMRVKNDYP 352
2myr.pdb 351 AGAKLTY-----I----NASG-HYIGPLFESDGGDGSSN-IYYYPKGIYSVMDYFKNKYY 399
p G y n Y
1bgga.pdb 344 -NIDIYITENGACIND-EVVNGK------VQDDRRISYMQQHLVQVHRTIH-DGLHVKGY 394
1cbg.pdb 390 -NPVIYITENGRNEFNDPT----LSLQESLLDTPRIDYYYRHLYYVLTAIG-DGVNVKGY 443
1gowa.pdb 380 -HLYMYVTENGIAD---------------DADYQRPYYLVSHVYQVHRAIN-SGADVRGY 422
1pbga.pdb 353 NYKKIYITENGLGYKD-EFVDNT------VYDDGRIDYVKQHLEVLSDAIA-DGANVKGY 404
2myr.pdb 400 -NPLIYVTENGISTPGS------ENRKESMLDYTRIDYLCSHLCFLNKVIKEKDVNVKGY 452
iY TENG D Ri Y Hl I g VkGY
1bgga.pdb 395 MAWSLLDNFEWAEGYNMRFGMIHVDFRT-QVRTPKESYYWYRNVVSNNWLETRR------ 447
1cbg.pdb 444 FAWSLFDNMEWDSGYTVRFGLVFVDFKNNLKRHPKLSAHWFKSFLKK------------- 490
1gowa.pdb 423 LHWSLADNYEWASGFSMRFGLLKVDYNT-KRLYWRPSALVYREIATNGAIT---DEIEHL 478
1pbga.pdb 405 FIWSLMDVFSWSNGYEKRYGLFYVDFDT-QERYPKKSAHWYKKLAETQVIE--------- 454
2myr.pdb 453 LAWALGDNYEFNNGFTVRFGLSYINWNNVTDRDLKKSGQWYQKFISP------------- 499
WsL Dn ew G RfGl vd r k S wy
1bgga.pdb -----------
1cbg.pdb -----------
1gowa.pdb 479 NSVPPVKPLRH 489
1pbga.pdb -----------
2myr.pdb -----------
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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