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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:51:53 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf11.html
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#====================================
# Aligned_structures: 5
#   1: 1bk1.pdb
#   2: 1xnb.pdb
#   3: 1xyn.pdb
#   4: 1xypa.pdb
#   5: 1yna.pdb
#
# Length:        205
# Identity:       39/205 ( 19.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     79/205 ( 38.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           32/205 ( 15.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bk1.pdb                1  AG-----------INYVQNYNGNLGDFTYDES-AGTFSMYWEDGVSSDFVVGLGWTTGS-   47
1xnb.pdb                1  AS-----------TDYWQNWTDGGGIVNAVNGSGGNYSVNW--SNTGNFVVGKGWTTGSP   47
1xyn.pdb                1  AS-----------INYDQNYQ-TGGQVSYSPS-NTGFSVNW--NTQDDFVVGVGWTTGS-   44
1xypa.pdb               1  --T-IQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNW--SNSGNFVGGKGWQPGTK   55
1yna.pdb                1  ---TTPNSEGWHDGYYYSWWSDGGAQATYTNLEGGTYEISW--GDGGNLVGGKGWNPGLN   55
                                          y        g   y     g  s  W       fV G GW  G  

1bk1.pdb               48  SN-AITYSAEYSASGSSSYLAVYGWVNYPQAEYYIVEDYGDYNPCSSATSLGTVYSDGST  106
1xnb.pdb               48  FRTINYNAGVWA-PNGNGYLTLYGWTRSPLIEYYVVDSWGTYRPT--GTYKGTVKSDGGT  104
1xyn.pdb               45  SA-PINFGGSFSVNSGTGLLSVYGWSTNPLVEYYIMEDNHNYPA--QGTVKGTVTSDGAT  101
1xypa.pdb              56  NK-VINFSGSYN-PNGNSYLSVYGWSRNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSV  113
1yna.pdb               56  AR-AIHFEGVYQ-PNGNSYLAVYGWTRNPLVEYYIVENFGTYDPSSGATDLGTVECDGSI  113
                               i   g      g  yL vYGW   Pl EYYive  g Y p    T  GtV sDG  

1bk1.pdb              107  YQVCTDTRTNEPSITG-TSTFTQYFSVRESTR-T--SGTVTVANHFNFWAQHGFGNS-DF  161
1xnb.pdb              105  YDIYTTTRYNAPSIDGDRTTFTQYWSVRQSKRPTGSNATITFTNHVNAWKSHGMNLGSNW  164
1xyn.pdb              102  YTIWENTRVNEPSIQG-TATFNQYISVRNSPR-T--SGTVTVQNHFNAWASLGLHLG-QM  156
1xypa.pdb             114  YDIYRTQRVNQPSIIG-TATFYQYWSVRRNHR-S--SGSVNTANHFNAWAQQGLTLG-TM  168
1yna.pdb              114  YRLGKTTRVNAPSIDG-TQTFDQYWSVRQDKR-T--SGTVQTGCHFDAWARAGLNVN-GD  168
                           Y     tR N PSI G t TF QY SVR   R t  sgtv   nHfnaWa  G       

1bk1.pdb              162  NYQVMAVEAWSGAGS-ASVTIS---  182
1xnb.pdb              165  AYQVMATEGYQSSGS-SNVTVW---  185
1xyn.pdb              157  NYQVVAVEGWGGSGS-ASQSVSN--  178
1xypa.pdb             169  DYQIVAVEGYFSSGS-ASITVS---  189
1yna.pdb              169  HYYQIVATEGYFSSGYARITVADVG  193
                            Yq  a e    sgs a  tv    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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