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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:13:59 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf14.html
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#====================================
# Aligned_structures: 3
#   1: 1b1ya.pdb
#   2: 1b9za.pdb
#   3: 1byb.pdb
#
# Length:        540
# Identity:      110/540 ( 20.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    309/540 ( 57.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          156/540 ( 28.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b1ya.pdb               1  --M-------KGNYVQVYVMLPLDAVSVNNRF-EKGDELRAQLRKLVEAGVDGVMVDVWW   50
1b9za.pdb               1  ---AVNGKGMN-PDYKAYLMAPLKK--IPE--VTNWETFENDLRWAKQNGFYAITVDFWW   52
1byb.pdb                1  SNM-------LLNYVPVYVMLPLGVVNVDNVF-EDPDGLKEQLLQLRAAGVDGVMVDVWW   52
                                       nyv vYvMlPL    v n   e  d l  qLr l  aGvdgvmVDvWW

1b1ya.pdb              51  GLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGT  110
1b9za.pdb              53  GDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ--  110
1byb.pdb               53  GIIELKGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGE  112
                           G  E kGpkqyDwsay  lfqlVq aGlklqaImSfHQCGGNVGD vNiPIPqWV d   

1b1ya.pdb             111  R-DPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIV  169
1b9za.pdb             111  KSDDSLYFKSETGTVNKETLNPLASD-------VIRKEYGELYTAFAAAMKPYK--DVIA  161
1byb.pdb              113  S-NHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLII  171
                             d difyt   GTrNkEyLt gvdn        a   Y dymtsFrenMkdfl  gvI 

1b1ya.pdb             170  DIEVGLGPAGELRYPSYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVG-H--------  220
1b9za.pdb             162  KIYLSGGPAGELRYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAW  221
1byb.pdb              172  DIEVGLGPAGELRYPSYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAG-H--------  222
                           dIevglGPAGELRYPSYpqS Gw fP iGeFqcYdkylkadFkaava  g h        

1b1ya.pdb             221  -------PEWEFPNDAGQYNDTPERTQFFRDNGTYLSEKGRFFLAWYSNNLIKHGDRILD  273
1b9za.pdb             222  GTKLISELAILPPSDG---------EQFLM--NGYLSMYGKDYLEWYQGILENHTKLIGE  270
1byb.pdb              223  -------PEWELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILD  275
                                  pewe P Da         tqFf   gtYlsekGkffL WYsn L nHgd Ild

1b1ya.pdb             274  EANKVFLG-YK-VQLAIKIAGVHWWYKVP---SHAAELTAGYYNLHDRDGYRTIARMLKR  328
1b9za.pdb             271  LAHNAFDTTF-QVPIGAKIAGVHWQYNN-PTIPHGAEKPAGYN------DYSHLLDAFKS  322
1byb.pdb              276  EANKAFLG-CK-VKLAIKVSGIHWWYKVE---NHAAELTAGYYNLNDRDGYRPIARMLSR  330
                           eAnkaFlg    V laiKiaGvHWwYkv     HaAEltAGYy      gYr iarmlkr

1b1ya.pdb             329  HRASINFTCAEMRDSEQPPDAMSAPEELVQQVLSAGWREGLNVSCENALPRYDPTAYNTI  388
1b9za.pdb             323  AKLDVTFTCLEMTDK-GSYPEYSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRV  381
1byb.pdb              331  HHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQI  390
                           h a  nFTClEMrDs qp da S P eLVQqvls gwregi v gENALpryd taYn i

1b1ya.pdb             389  LRNARPHGINQSGPPEHKLFGFTYLRLSNQL-VEGQNYVNFKTFVDRMHANLPRDPYV--  445
1b9za.pdb             382  AEMAFN----------YNFAGFTLLRYQ-DVMYNNSLMGKFKDLL---------------  415
1byb.pdb              391  ILNAKPQGVNNNGPPKLSMFGVTYLRLSDDL-LQKSNFNIFKKFVLKMHADQDYCANPQK  449
                             nA p             fGfTyLRls dl    sn   FK fv               

1b1ya.pdb             446  --DPMAPLPRSGPEISIEMILQAAQPKIQPFPFQEHTDLPVGPTGGMGGQAEGPTCG---  500
1b9za.pdb             416  ---------------------------------------------------------GVT  418
1byb.pdb              450  YNHAITPLKPSAPKIPIEVLLEATKPTLPFPW-LPETDMKVD------------------  490
                                                                                       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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