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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:09:23 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf17.html
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#====================================
# Aligned_structures: 2
#   1: 1aq0a.pdb
#   2: 1ghsa.pdb
#
# Length:        312
# Identity:      148/312 ( 47.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    148/312 ( 47.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           12/312 (  3.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aq0a.pdb               1  IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS   60
1ghsa.pdb               1  IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA   60
                           IGVCYG   NNLP  S VV    S GI  MR Y     AL A    GI       ND L 

1aq0a.pdb              61  NLAASPAAAASWVKSNIQAYP-KVSFRYVCVGNEVAGGATRNLVPAMKNVHGALVAAGLG  119
1ghsa.pdb              61  NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQSILPAMRNLNAALSAAGLG  120
                           N AAS   AASWV  N   Y   V   Y   GNEV GGAT    PAM N   AL AAGLG

1aq0a.pdb             120  HIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAWAYNP  179
1ghsa.pdb             121  AIKVSTSIRFDEVANSFPPSAGVFK--N-AYMTDVARLLASTGAPLLANVYPYFAYRDNP  177
                            IKV TS          PPSAG F     A M  V   LA T APL AN YPY A   NP

1aq0a.pdb             180  SAMDMGYALFNASGTVVRD----GAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGW  235
1ghsa.pdb             178  GSISLNYATFQP---GTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGW  234
                                 YA F                 Y  LFD  VDA Y A  K G   VK VVSESGW

1aq0a.pdb             236  PSGGGTAATPANARFYNQHLINHVGRGTPRHPGAIETYIFAMFNENQKDSGVEQNWGLFY  295
1ghsa.pdb             235  PSAGGFAASAGNARTYNQGLINHVGGGTPKKREALETYIFAMFNENQKTGDATERSFGLF  294
                           PS GG AA   NAR YNQ LINHVG GTP    A ETYIFAMFNENQK            

1aq0a.pdb             296  PNMQHV-YPINF  306
1ghsa.pdb             295  NPDKSPAYNIQF  306
                                  Y I F


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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