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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 06:54:32 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf33.html
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#====================================
# Aligned_structures: 4
#   1: 1eur.pdb
#   2: 1kit.pdb
#   3: 2sli.pdb
#   4: 3sil.pdb
#
# Length:        603
# Identity:       30/603 (  5.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     63/603 ( 10.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          352/603 ( 58.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1eur.pdb                1  GEPLYTEQDLAVNGRE-----------------GFPNYRIPALTVTP--DGDLLASYDGR   41
1kit.pdb                1  --------VIFRG-----------------------PDRIPSIVASSVTPGVVTAFAEKR   29
2sli.pdb                1  ------GENIFYAGDV---------------T-ESNYFRIPSLLTLS--TGTVISAADAR   36
3sil.pdb                1  -----EKSVVFKAEGEHFTDQKGNTIVGSGSGGTTKYFRIPAMCTTS--KGTIVVFADAR   53
                                     f                           RIP     s   G     ad R

1eur.pdb               42  -PTGIDA--PGPNSILQRRSTDGGRTWGEQQVVSAG--------------------Q-TT   77
1kit.pdb               30  VGGGDPGALSNTNDIITRTSRDGGITWDTELNLTE-------------------------   64
2sli.pdb               37  YGGTHDS--KSKINIAFAKSTDGGNTWSEPTLPLKFDDYIAKNIDWPRDSVGKNVQIQG-   93
3sil.pdb               54  HNTASDQ---SFIDTAAARSTDGGKTWNKKIA-IYN--------------------DRV-   88
                                d        i    StDGG TW                                 

1eur.pdb               78  AP------IKGFSDPSYLVDRE-TGTIFNFHVYSQRQGF-A--GSRPGTDPAD-------  120
1kit.pdb               65  --QINVSDEFDFSDPRPIYDPS-SNTVLVSYARWPTDAAQNGDRIKPW------------  109
2sli.pdb               94  --------SASYIDPVLLEDKL-TKRIFLFADLMPAGIGSS--NASVGSG---FKEVNGK  139
3sil.pdb               89  ----------------------NSKL---------------------------------S   93
                                                                                       

1eur.pdb                   ------------------------------------------------------------     
1kit.pdb                   ------------------------------------------------------------     
2sli.pdb              140  KYLKLRWHKDAGRAYDYTIREKGVIYNDATNQPTEFRVDGEY-NLYQHDTNLTCKQYDYN  198
3sil.pdb               94  RV------------------M-DP----------------TCIVANIQG------RETIL  112
                                                                                       

1eur.pdb              121  -----------------------------PNVLHANVATSTDGG-LTWSHR-TI-TADIT  148
1kit.pdb              110  ------------------------------MPNGIFYSVYDV-ASGNWQAP---------  129
2sli.pdb              199  FSGNNLIESKTDVDVNMNIF-YKNSVFKAFPTNYLAMRYSDDEG-ASWSDLDIV-SSFK-  254
3sil.pdb              113  VMV--GKWNNN----DKTWGAYRDKAPD--TDWDLVLYKSTDDG-VTFSKVETNIHDIVT  163
                                                                  s d g   ws           

1eur.pdb              149  PDPGWRS-RFAASGEGIQLRYGP------HAGRLIQQYTIIN--AA--G-AFQAVSVYSD  196
1kit.pdb              130  -------IVNPGPGHGITLTRQ-QNISGSQNGRLIYPAIVLD--R---F-FLNVMSIYSD  175
2sli.pdb              255  -PEVSKF-LVVGPGIGKQISTGE------NAGRLLVPLYSKSSA--------ELGFMYSD  298
3sil.pdb              164  KNGTISA-MLGGVGSGLQLN----------DGKLVFPVQMVR--TKNITTVLNTSFIYST  210
                                      g G G ql            GrL  p                    YSd

1eur.pdb              197  DHGRTWRAGEAV-G------------VG--MDENKTVELSDGRVLLNSRDSA--------  233
1kit.pdb              176  DGGSNWQTGSTLPIPFRWKSSSILETLE--PSEADMVELQNGDLLLTARLDFNQIVNGVN  233
2sli.pdb              299  DHGDNWTYVEADNL------------TGGATAEAQIVEMPDGSLKTYLRTG---------  337
3sil.pdb              211  DGIT-WSLP--SGY------------CEGFGSENNIIEFNA-SLVNNIRN----------  244
                           D g  W                          E   vE     l    R           

1eur.pdb              234  RSGYRKVAVSTDGGHSYGPVTI---DRDL----PDPTNNASIIRA-FPDAPAGSAR----  281
1kit.pdb              234  YS-PRQQFLSKDGGITWSLLEA-NNANVFSN-ISTGTVDASITRF-E---------QS-D  279
2sli.pdb              338  -SNCIAEVTSIDGGETWSDRVP---LQGI--STTSYGTQLSVINYSQ---------P-ID  381
3sil.pdb              245  -SGLRRSFETKDFGKTWTE-FPPM-DKKV--DNRNHGVQGSTITI-P---------S--G  287
                            S  r    s DgG tw                       S i                 

1eur.pdb              282  -AKVLLFSNAAS----QT-SRSQGTIRMSCDD--------G-QTWPVSKVFQ--P--G--  320
1kit.pdb              280  GSHFLLFTNPQGNPAGTN-GRQNLGLWFSFDE--------G-VTWKGPIQLV--N--G--  323
2sli.pdb              382  GKPAIILSSPNA----TN-GRKNGKIWIGLV-NDTGNTGIDKYSVEWKYSYAVDTPQM--  433
3sil.pdb              288  NKLVAAHSSAQNKN--NDYTRSDISLYAHNL-Y--------SGEVKLIDDFY--PKVGNA  334
                                  s            R                                    g  

1eur.pdb              321  SM-SYSTLTALP---DGTYGLLYEPG------------TGIRYANFN---LAWL-GG--I  358
1kit.pdb              324  AS-AYSDIYQLD---SENAIVIVETDN-----------SNMRILRMP-ITLLKQ-KL-TL  365
2sli.pdb              434  GY-SYSCLAELP---DGQVGLLYEKYDSWSRNELHLKD-ILKFEKYS-I-SELT-GQA--  483
3sil.pdb              335  SGAGYSCLSYRKNVDKETLYVVYEAN------------GSIEFQDLSRH-LPVIKSY-N-  379
                               YS l  l           yE                          l         

1eur.pdb              359  CAP  361
1kit.pdb              366  SQN  368
2sli.pdb                   ---     
3sil.pdb                   ---     
                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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