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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:19:04 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf34.html
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#====================================
# Aligned_structures: 3
#   1: 1ncan.pdb
#   2: 1nsba.pdb
#   3: 2bat.pdb
#
# Length:        407
# Identity:       88/407 ( 21.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    235/407 ( 57.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           33/407 (  8.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ncan.pdb               1  I-REFNNLTKGLCTINSWHIYGKDNAVRIGE--D-SDVLVTREPYVSCDPDECRFYALSQ   56
1nsba.pdb               1  -EPEWTYPRLSCQG-STFQKALLISPHRFGEARGNSAPLIIREPFIACGPKECKHFALTH   58
2bat.pdb                1  --VEYRNWSKPQCQITGFAPFSKDNSIRLSA--G-GDIWVTREPYVSCDPVKCYQFALGQ   55
                              E  n  k  c    f    kdn  R ge  g sd lvtREPyvsCdP eC  fAL q

1ncan.pdb              57  GTTIRGKHSNGTIHDRSQYRDLISWPLSSPPTVYNSRVECIGWSSTSCHDGRARMSICIS  116
1nsba.pdb              59  YAAQPGGYYNGTREDRNKLRHLISVKLGKIPTVENSIFHMAAWSGSACHDGREWTYIGVD  118
2bat.pdb               56  GTTLDNKHSNDTVHDRIPHRTLLMNELGVPFHL-GTRQVCIAWSSSSCHDGKAWLHVCIT  114
                           gtt  gkhsNgT hDR   R Lis  Lg pptv nsr  ciaWSsssCHDGraw  ici 

1ncan.pdb             117  GPNNNASAVIWYNRRPVTEINTWARNILRTQESECVCQNGVCPVVFTDGSATGPAETRIY  176
1nsba.pdb             119  GPDSNALIKIKYGEAYTDTYHSYANNILRTQESACNCIGGDCYLMITDGSASGISKCRFL  178
2bat.pdb              115  GDDKNATASFIYDGRLVDSIGSWSQNILRTQESECVCINGTCTVVMTDGSASGRADTRIL  174
                           Gpd NA a i Y  r vd i swa NILRTQESeCvCinG C vv TDGSAsG a tRil

1ncan.pdb             177  YFKEGKILKWEPLTGTAKHIEECSCYGEQ-AGVTCTCRDNWQGSNRPVIQIDPVAMTHTS  235
1nsba.pdb             179  KIREGRIIKEIFPTGRVEHTEECTCGFASNKTIECACRDNSYTAKRPFVKLNVETDTAEI  238
2bat.pdb              175  FIEEGKIVHISPLAGSAQHVEECSCYPRY-PGVRCICRDNWKGSNRPVVDINMEDYSIDS  233
                            i EGkI k  pltG a H EECsCy     gv C CRDNw gsnRPvv in e  t  s

1ncan.pdb             236  QYICSPVLTDNPRPNDPT---V-GKCNDPYPGNNNNGVKGFSY--LDG--GNTWLGRTIS  287
1nsba.pdb             239  RLMCTETYLDTPRPDDGSITGP-CE--S-NGDKGRGGIKGGFVHQRMASKIGRWYSRTMS  294
2bat.pdb              234  SYVCSGLVGDTPRNDDRS---SNSNCRNPNNERGTQGVKGWAF--DNG--NDLWMGRTIS  286
                            y Cs    DtPRpdD s           n   g  GvKG       g     W gRTiS

1ncan.pdb             288  IASRSGYEMLKVPN--ALTDDRSK-PTQGQTIVLNTDWSGYSGSFMDYWAEGECYRACFY  344
1nsba.pdb             295  KTERMGMELYVRYDGDPWTDSD-A-LAHSGVMVSMKEPGWYSFGFEIKD--KKCDVPCIG  350
2bat.pdb              287  KDLRSGYETFKVIG--GWSTPNSKSQINRQVIVDSDNRSGYSGIFSVEG--KSCINRCFY  342
                           k  RsGyE  kv     wtd   k     qviV     sgYSg F      k C   Cfy

1ncan.pdb             345  VELIRGRP-KEDKVWWTSNSIVSMCSSTEFLGQWNWPDGAKIEYFL-  389
1nsba.pdb             351  IEMVHDGGKK----TWHSAATAIYCLMGSGQLLWDTVTGVDMAL---  390
2bat.pdb              343  VELIRGRK-QETRVWWTSNSIVVFCGTSGTYGTGSWPDGANINFMPI  388
                           vElirgr  k    wWtSnsiv  C      g w wpdGa i     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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