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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 19:33:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/gpdh.html
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#====================================
# Aligned_structures: 8
# 1: 1cero.pdb
# 2: 1gado.pdb
# 3: 1gd1o.pdb
# 4: 1ggao.pdb
# 5: 1gpdg.pdb
# 6: 1gypa.pdb
# 7: 1hdgo.pdb
# 8: 3gpdr.pdb
#
# Length: 363
# Identity: 82/363 ( 22.6%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 131/363 ( 36.1%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 40/363 ( 11.0%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1cero.pdb 1 ---MKVGINGFGRIGRQVFRILHSRG------VEVALIND-LTDNK-TLAHLLKYDSIYH 49
1gado.pdb 1 --TIKVGINGFGRIGRIVFRAAQKRS----D-IEIVAIND-LLDAD-YMAYMLKYDSTHG 51
1gd1o.pdb 1 --AVKVGINGFGRIGRNVFRAALKNP----D-IEVVAVND-LTDAN-TLAHLLKYDSVHG 51
1ggao.pdb 1 --TIKVGINGFGRIGRMVFQALCDDGLLGNE-IDVVAVVD-MNTDARYFAYQMKYDSVHG 56
1gpdg.pdb 1 ---SKIGINGFGRIGRLVLRAALSCG------AQVVAVNDPFIALE-YMVYMFKYDSTHG 50
1gypa.pdb 1 A-PIKVGINGFGRIGRMVFQAICDQGLIGTE-IDVVAVVD-MSTNAEYFAYQMKHDTVHG 57
1hdgo.pdb 1 ---ARVAINGFGRIGRLVYRIIYERKN--PD-IEVVAIND-LTDTK-TLAHLLKYDSVHK 52
3gpdr.pdb 1 -GKVKVGVDGFGRIGRLVTRAAFNSG-----KVDIVAINDPFIDLH-YMVYMFQYDSTHG 53
kvginGFGRIGR V va D kyDs h
1cero.pdb 50 RFPGEVAYDDQ--------YLYVDGKA-IRATAVKDPKEIPWAEAGVGVVIESTGVFTDA 100
1gado.pdb 52 RFDGTVEVKDG--------HLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTD 102
1gd1o.pdb 52 RLDAEVSVNGN--------NLVVNGKE-IIVKAERDPENLAWGEIGVDIVVESTGRFTKR 102
1ggao.pdb 57 KFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVK 116
1gpdg.pdb 51 VFKGEVKMEDG--------ALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTI 101
1gypa.pdb 58 RPKYTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDK 117
1hdgo.pdb 53 KFPGKVEYTEN--------SLIVDGKE-IKVFAEPDPSKLPWKDLGVDFVIESTGVFRNR 103
3gpdr.pdb 54 KFHGTVKAEDG--------KLVIDGKA-ITIFQERDPENIKWGDAGTAYVVESTGVFTTM 104
V L v G P W G v EsTG F
1cero.pdb 101 DKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKV 160
1gado.pdb 103 ETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKY-AG-QDIVSNASCTTNCLAPLAKV 160
1gd1o.pdb 103 EDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKV 162
1ggao.pdb 117 SAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHV 176
1gpdg.pdb 102 EKASAHFKGGAKKVVISAPSAD-APMFVCGVNLEKY-SKDMTVVSNASCTTNCLAPVAKV 159
1gypa.pdb 118 LKAEGHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHV 177
1hdgo.pdb 104 EKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKP-EHTIISCASCTTNSIAPIVKV 162
3gpdr.pdb 105 EKAGAHLKGGAKRIVISAPSAD-APMFVMGVNHFKY-ANSLKIISNASCTTNCLAPLAKV 162
A H GAkkv i aP V G N y SnASCTTN lAP V
1cero.pdb 161 LEEA-FGVEKALMTTVHSYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLP 218
1gado.pdb 161 INDN-FGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLP 219
1gd1o.pdb 163 LHEQ-FGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLP 220
1ggao.pdb 177 LVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIP 236
1gpdg.pdb 160 LHEN-FEIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIP 218
1gypa.pdb 178 LTKENFGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIP 237
1hdgo.pdb 163 LHEK-FGIVSGMLTTVHSYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVP 220
3gpdr.pdb 163 IHDH-FGIVEGLMTTVHAITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIP 221
Fgi g mTTvH T Q D Kd R R Aa niIP TGAAKAv V P
1cero.pdb 219 SLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIV 278
1gado.pdb 220 ELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVV 279
1gd1o.pdb 221 ELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLV 280
1ggao.pdb 237 STQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELV 296
1gpdg.pdb 219 ELDGKLTGMAFRVPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVV 278
1gypa.pdb 238 STKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELV 297
1hdgo.pdb 221 EVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIV 280
3gpdr.pdb 222 ELDGKLTGMAFRVPTANVSVLDLTCRLEKPAKYDDIKKVVKEASEGPLKGILGYTEDEVV 281
Gkl GMa RVPT S Dlt K A kg l y V
1cero.pdb 279 LQDIVMDPHSSIVDAKLT----K--ALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV- 331
1gado.pdb 280 STDFNGEVCTSVFDAKAG---IA--LNDNFVKLVSWYDNETGYSNKVLDLIAHISK---- 330
1gd1o.pdb 281 SRDYNGSTVSSTIDALST---MV--IDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL- 334
1ggao.pdb 297 SADFISDSRSSIYDSKATLQNNLPN-ERRFFKIVSWYDNEWGYSHRVVDLVRHMAARDRA 355
1gpdg.pdb 279 SSDFIGDNRSSIFDAKAG---IQ--LSKTFVKVVSWYDNEFGYSQRVIDLLKHMQKVDSA 333
1gypa.pdb 298 SADFINDNRSSVYDSKATLQNNLPG-EKRFFKVVSWYDNEWAYSHRVVDLVRYMAAKDAA 356
1hdgo.pdb 281 SSDIIGTTFSGIFDATIT---NV--IGGKLVKVASWYDNEYGYSNRVVDTLELLLKM--- 332
3gpdr.pdb 282 SDDFNGSNHSSIFDAGAG---IE--LNDTFVKLVSWYDNEFGYSERVVDLMAHMASKE-- 334
s D ss D K sWYDNE gYs rV Dl
1cero.pdb ---
1gado.pdb ---
1gd1o.pdb ---
1ggao.pdb 356 AKL 358
1gpdg.pdb ---
1gypa.pdb 357 SS- 358
1hdgo.pdb ---
3gpdr.pdb ---
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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