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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 19:33:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/gpdh.html
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#====================================
# Aligned_structures: 8
#   1: 1cero.pdb
#   2: 1gado.pdb
#   3: 1gd1o.pdb
#   4: 1ggao.pdb
#   5: 1gpdg.pdb
#   6: 1gypa.pdb
#   7: 1hdgo.pdb
#   8: 3gpdr.pdb
#
# Length:        363
# Identity:       82/363 ( 22.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    131/363 ( 36.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           40/363 ( 11.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cero.pdb               1  ---MKVGINGFGRIGRQVFRILHSRG------VEVALIND-LTDNK-TLAHLLKYDSIYH   49
1gado.pdb               1  --TIKVGINGFGRIGRIVFRAAQKRS----D-IEIVAIND-LLDAD-YMAYMLKYDSTHG   51
1gd1o.pdb               1  --AVKVGINGFGRIGRNVFRAALKNP----D-IEVVAVND-LTDAN-TLAHLLKYDSVHG   51
1ggao.pdb               1  --TIKVGINGFGRIGRMVFQALCDDGLLGNE-IDVVAVVD-MNTDARYFAYQMKYDSVHG   56
1gpdg.pdb               1  ---SKIGINGFGRIGRLVLRAALSCG------AQVVAVNDPFIALE-YMVYMFKYDSTHG   50
1gypa.pdb               1  A-PIKVGINGFGRIGRMVFQAICDQGLIGTE-IDVVAVVD-MSTNAEYFAYQMKHDTVHG   57
1hdgo.pdb               1  ---ARVAINGFGRIGRLVYRIIYERKN--PD-IEVVAIND-LTDTK-TLAHLLKYDSVHK   52
3gpdr.pdb               1  -GKVKVGVDGFGRIGRLVTRAAFNSG-----KVDIVAINDPFIDLH-YMVYMFQYDSTHG   53
                               kvginGFGRIGR V                 va  D             kyDs h 

1cero.pdb              50  RFPGEVAYDDQ--------YLYVDGKA-IRATAVKDPKEIPWAEAGVGVVIESTGVFTDA  100
1gado.pdb              52  RFDGTVEVKDG--------HLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTD  102
1gd1o.pdb              52  RLDAEVSVNGN--------NLVVNGKE-IIVKAERDPENLAWGEIGVDIVVESTGRFTKR  102
1ggao.pdb              57  KFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVK  116
1gpdg.pdb              51  VFKGEVKMEDG--------ALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTI  101
1gypa.pdb              58  RPKYTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDK  117
1hdgo.pdb              53  KFPGKVEYTEN--------SLIVDGKE-IKVFAEPDPSKLPWKDLGVDFVIESTGVFRNR  103
3gpdr.pdb              54  KFHGTVKAEDG--------KLVIDGKA-ITIFQERDPENIKWGDAGTAYVVESTGVFTTM  104
                                V              L v G           P    W   G   v EsTG F   

1cero.pdb             101  DKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKV  160
1gado.pdb             103  ETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKY-AG-QDIVSNASCTTNCLAPLAKV  160
1gd1o.pdb             103  EDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKV  162
1ggao.pdb             117  SAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHV  176
1gpdg.pdb             102  EKASAHFKGGAKKVVISAPSAD-APMFVCGVNLEKY-SKDMTVVSNASCTTNCLAPVAKV  159
1gypa.pdb             118  LKAEGHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHV  177
1hdgo.pdb             104  EKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKP-EHTIISCASCTTNSIAPIVKV  162
3gpdr.pdb             105  EKAGAHLKGGAKRIVISAPSAD-APMFVMGVNHFKY-ANSLKIISNASCTTNCLAPLAKV  162
                             A  H   GAkkv i aP        V G N   y        SnASCTTN lAP   V

1cero.pdb             161  LEEA-FGVEKALMTTVHSYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLP  218
1gado.pdb             161  INDN-FGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLP  219
1gd1o.pdb             163  LHEQ-FGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLP  220
1ggao.pdb             177  LVKEGFGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIP  236
1gpdg.pdb             160  LHEN-FEIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIP  218
1gypa.pdb             178  LTKENFGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIP  237
1hdgo.pdb             163  LHEK-FGIVSGMLTTVHSYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVP  220
3gpdr.pdb             163  IHDH-FGIVEGLMTTVHAITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIP  221
                                Fgi  g mTTvH  T  Q   D    Kd R  R Aa niIP  TGAAKAv  V P

1cero.pdb             219  SLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIV  278
1gado.pdb             220  ELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVV  279
1gd1o.pdb             221  ELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLV  280
1ggao.pdb             237  STQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELV  296
1gpdg.pdb             219  ELDGKLTGMAFRVPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVV  278
1gypa.pdb             238  STKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELV  297
1hdgo.pdb             221  EVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIV  280
3gpdr.pdb             222  ELDGKLTGMAFRVPTANVSVLDLTCRLEKPAKYDDIKKVVKEASEGPLKGILGYTEDEVV  281
                              Gkl GMa RVPT   S  Dlt                K A     kg l y     V

1cero.pdb             279  LQDIVMDPHSSIVDAKLT----K--ALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV-  331
1gado.pdb             280  STDFNGEVCTSVFDAKAG---IA--LNDNFVKLVSWYDNETGYSNKVLDLIAHISK----  330
1gd1o.pdb             281  SRDYNGSTVSSTIDALST---MV--IDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL-  334
1ggao.pdb             297  SADFISDSRSSIYDSKATLQNNLPN-ERRFFKIVSWYDNEWGYSHRVVDLVRHMAARDRA  355
1gpdg.pdb             279  SSDFIGDNRSSIFDAKAG---IQ--LSKTFVKVVSWYDNEFGYSQRVIDLLKHMQKVDSA  333
1gypa.pdb             298  SADFINDNRSSVYDSKATLQNNLPG-EKRFFKVVSWYDNEWAYSHRVVDLVRYMAAKDAA  356
1hdgo.pdb             281  SSDIIGTTFSGIFDATIT---NV--IGGKLVKVASWYDNEYGYSNRVVDTLELLLKM---  332
3gpdr.pdb             282  SDDFNGSNHSSIFDAGAG---IE--LNDTFVKLVSWYDNEFGYSERVVDLMAHMASKE--  334
                           s D      ss  D                 K  sWYDNE gYs rV Dl          

1cero.pdb                  ---     
1gado.pdb                  ---     
1gd1o.pdb                  ---     
1ggao.pdb             356  AKL  358
1gpdg.pdb                  ---     
1gypa.pdb             357  SS-  358
1hdgo.pdb                  ---     
3gpdr.pdb                  ---     
                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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