################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 22:06:08 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/grs.html
################################################################################################
#====================================
# Aligned_structures: 11
#   1: 1ebda.pdb
#   2: 1gera.pdb
#   3: 1lpfa.pdb
#   4: 1lvl.pdb
#   5: 1ndaa.pdb
#   6: 1npx.pdb
#   7: 1ojt.pdb
#   8: 1trb.pdb
#   9: 2tpra.pdb
#  10: 3grs.pdb
#  11: 3lada.pdb
#
# Length:        598
# Identity:       12/598 (  2.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     28/598 (  4.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          333/598 ( 55.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ebda.pdb               1  ----AIETETLVVGAGPGGYVAAIRAAQ-L-G-QKVTIVEKG---------------N-L   37
1gera.pdb               1  -----KHYDYIAIGGGSGGIASINRAAM-Y-G-QKCALIEAK---------------E-L   36
1lpfa.pdb               1  ----SQKFDVVVIGAGPGGYVAAIRAAQ-L-G-LKTACIEKYAGKAGAT--------A-L   44
1lvl.pdb                1  --QQTIQTTLLIIGGGPGGYVAAIRAGQ-L-G-IPTVLVEGQ---------------A-L   39
1ndaa.pdb               1  ------IFDLVVIGAGSGGLEAAWNAATLY-K-KRVAVIDVQ------MVHGPPFFSA-L   45
1npx.pdb                1  M-------KVIVLGSSHGGYEAVEELLN-LHPDAEIQWYEKG---------------DFI   37
1ojt.pdb                1  -GSADAEYDVVVLGGGPGGYSAAFAAAD-E-G-LKVAIVERY------K--------T-L   41
1trb.pdb                1  --GTTKHSKLLILGSGPAGYTAAVYAAR-A-N-LQPVLITGM---------------E-K   39
2tpra.pdb               1  ----SRAYDLVVIGAGSGGLEAGWNAASLH-K-KRVAVIDLQ------KHHGPPHYAA-L   47
3grs.pdb                1  ----VASYDYLVIGGGSGGLASARRAAE-L-G-ARAAVVESH---------------K-L   37
3lada.pdb               1  ----SQKFDVIVIGAGPGGYVAAIKSAQ-L-G-LKTALIEKYKGKEGKT--------A-L   44
                                        G g gG                                         

1ebda.pdb              38  G-GVCLNVGCIPS-----KA-LI-S---ASHRYEQA-K-HSE---EMGIKA-E-NVTIDF   79
1gera.pdb              37  G-GTCVNVGCVPK-----KV-MW-H---AAQIREAIHM-YGP---DYGFDT-T-INKFNW   79
1lpfa.pdb              45  G-GTCLNVGCIPS-----KA-LL-D---SSYKYHEA-AEAFK---VHGIEA-A-GVTIDV   87
1lvl.pdb               40  G-GTCLNIGCIPS-----KA-LI-H---VAEQFHQA-S-RFTEPSPLGISV-A-SPRLDI   84
1ndaa.pdb              46  G-GTCVNVGCVPK-----KL-MV-T---GAQYMEHL-R-ESA---GFGWEFDRTTLRAEW   89
1npx.pdb               38  SFLSCGM-----Q-----LY-LE-GKVK--------------------------------   53
1ojt.pdb               42  G-GVCLNVGCIPS-----KA-LL-H---NAAVIDEV-R-HLA---ANGIKY-P-EPELDI   83
1trb.pdb               40  G-GQLTT-----TTEVENW-PGDPNDL---------------------------------   59
2tpra.pdb              48  G-GTCVNVGCVPK-----KL-MV-T---GANYMDTI-R-ESA---GFGWELDRESVRPNW   91
3grs.pdb               38  G-GTCVNVGCVPK-----KV-MW-N---TAVHSEFM-H-DHA---DYGFPS-C-EGKFNW   79
3lada.pdb              45  G-GTCLNVGCIPS-----KA-LL-D---SSYKFHEA-HESFK---LHGIST-G-EVAIDV   87
                           g g c                                                       

1ebda.pdb              80  AKVQEWKASVVKKLTG-GVEGLLKGNK-VEIV-KGEAYFVD-A--NTVRVVN--------  125
1gera.pdb              80  ETLIASRTAYIDRIHT-SYENVLGKNN-VDVI-KGFARFVD-A--KTLEV----------  123
1lpfa.pdb              88  PAMVARKANIVKNLTG-GIATLFKANG-VTSF-EGHGKLLA-N--KQVEVTG--------  133
1lvl.pdb               85  GQSVAWKDGIVDRLTT-GVAALLKKHG-VKVV-HGWAKVLD-G--KQVEVD---------  129
1ndaa.pdb              90  KKLIAVKDEAVLNINK-SYEEMFRDTEGLEFF-LGWGSLES-K--NVVNVRE--------  136
1npx.pdb               54  ---------DVNSVRYM-TGEKMESRG-VNVFSNTEITAIQ-PKEHQVTVKD--------   93
1ojt.pdb               84  DMLRAYKDGVVSRLTG-GLAGMAKSRK-VDVI-QGDGQFLD-P--HHLEVSLTAGDAYEQ  137
1trb.pdb               60  ---------TGPLLME-RMHEHATKFE-TEII-FDHINKVD-LQNRPFRLNG--------   98
2tpra.pdb              92  KALIAAKNKAVSGIND-SYEGMFADTEGLTFH-QGFGALQD-N--HTVLVRE--------  138
3grs.pdb               80  RVIKEKRDAYVSRLNA-IYQNNLTKSH-IEII-RGHAAFTSDP-KPTIEV----------  125
3lada.pdb              88  PTMIARKDQIVRNLTG-GVASLIKANG-VTLF-EGHGKLLA-G--KKVEVTA--------  133
                                                                            v          

1ebda.pdb             126  --G----DS-AQTYTFKNAIIATGSRPIELP--N-FK---FSNRILDST---GALNLG--  167
1gera.pdb             124  ---------NGETITADHILIATGGRPSHPD--I---P--GVEYGIDSD---GFFALP--  162
1lpfa.pdb             134  --L----DGATQVLEAENVIIASGSAPVEIP--P-AP--LTDDIIVDST---GALEFQ--  177
1lvl.pdb              130  ----------GQRIQCEHLLLATGSSSVELP--M-LP---LGGPVISST---EALAPK--  168
1ndaa.pdb             137  --SADPASAVKERLETENILLASGSWPHMPN--I---P--GIEHCISSN---EAFYLP--  182
1npx.pdb               94  --L---VSGEERVENYDKLIISPGAVPFELD--I-PGK--DLDNIYLMRGRQWAIKLKQK  143
1ojt.pdb              138  AAP----TGEKKIVAFKNCIIAAGSRVTKLP--F-IP---EDPRIIDSS---GALALK--  182
1trb.pdb               99  ---------DNGEYTCDALIIATGASARYLGLPS-EEAF-KGRGVSA-C---ATSDGFFY  143
2tpra.pdb             139  --SADPNSAVLETLDTEYILLATGSWPQHLG--I---E--GDDLCITSN---EAFYLD--  184
3grs.pdb              126  ---------SGKKYTAPHILIATGGMPSTPH--ESQIP--GASLGITSD---GFFQLE--  167
3lada.pdb             134  --A----DGSSQVLDTENVILASGSKPVEIP--P-AP--VDQDVIVDST---GALDFQ--  177
                                                a G                                    

1ebda.pdb             168  ----EVPKSLVVIGGGYIGIELGTAYANFG---TKVTILEGAGEILS-GFEKQMAAIIKK  219
1gera.pdb             163  ----ALPERVAVVGAGYIAVELAGVINGLG---AKTHLFVRKHAPLR-SFDPMISETLVE  214
1lpfa.pdb             178  ----AVPKKLGVIGAGVIGLELGSVWARLG---AEVTVLEALDKFLP-AADEQIAKEALK  229
1lvl.pdb              169  ----ALPQHLVVVGGGYIGLELGIAYRKLG---AQVSVVEARERILP-TYDSELTAPVAE  220
1ndaa.pdb             183  ----EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR-GFDHTLREELTK  237
1npx.pdb              144  TVDPE-VNNVVVIGSGYIGIEAAEAFAKAG---KKVTVIDILDRPLGVYLDKEFTDVLTE  199
1ojt.pdb              183  ----EVPGKLLIIGGGIIGLEMGTVYSTLG---SRLDVVEMMDGLMQ-GADRDLVKVWQK  234
1trb.pdb              144  R---N--QKVAVIGGGNTAVEEALYLSNIA---SEVHLIHRRDGFR---A-EKILIKRLM  191
2tpra.pdb             185  ----EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-GFDSELRKQLTE  239
3grs.pdb              168  ----ELPGRSVIVGAGYIAVEMAGILSALG---SKTSLMIRHDKVLR-SFDSMISTNCTE  219
3lada.pdb             178  ----NVPGKLGVIGAGVIGLELGSVWARLG---AEVTVLEAMDKFLP-AVDEQVAKEAQK  229
                                        G G i  E                                       

1ebda.pdb             220  RLK-KKGVEVVTNALAKGAEERED-GVTVTYEAN------G--ETKTIDADYVLVTVGRR  269
1gera.pdb             215  VMN-AEGPQLHTNAIPKAVVKNTDGSLTLELE-----------DGRSETVDCLIWAIGRE  262
1lpfa.pdb             230  VLT-KQGLNIRLGARVTASEVKKK-QVTVTFTDA------N--GEQAATFDKLIVAVGRR  279
1lvl.pdb              221  SLK-KLGIALHLGHSVEGYEN-----GCLLANDG---K--G--GQLRLEADRVLVAVGRR  267
1ndaa.pdb             238  QLT-ANGIQILTKENPAKVELNADGSKSVTFE-----------SGKKMDFDLVMMAIGRS  285
1npx.pdb              200  EME-ANNITIATGETVERYEGD-GRVQKVVTD-----------K-NAYDADLVVVAVGVR  245
1ojt.pdb              235  QNE-YRFDNIMVNTKTVAVEPKED-GVYVTFEGA------NAP-KEPQRYDAVLVAAGRA  285
1trb.pdb              192  DKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQ-NS-DN--I-ESLDVAGLFVAIGHS  246
2tpra.pdb             240  QLR-ANGINVRTHENPAKVTKNADGTRHVVFE-----------SGAEADYDVVMLAIGRV  287
3grs.pdb              220  ELE-NAGVEVLKFSQVKEVKKTLSGLEVSMVT-AVPGRLPV--MTMIPDVDCLLWAIGRV  275
3lada.pdb             230  ILT-KQGLKILLGARVTGTEVKNK-QVTVKFVDA------E--GEKSQAFDKLIVAVGRR  279
                                                                             d    a G  

1ebda.pdb             270  PNTDELGLEQIGIKMTNRGLIEVDQ-----QCRTSVPNIFAIGDIVPG-----------P  313
1gera.pdb             263  PANDNINLEAAGVKTNEKGYIVVDK-----YQNTNIEGIYAVGDNTGA-----------V  306
1lpfa.pdb             280  PVTTDLLAADSGVTLDERGFIYVDD-----HCKTSVPGVFAIGDVVRG-----------A  323
1lvl.pdb              268  PRTKGFNLECLDLKMN-GAAIAIDE-----RCQTSMHNVWAIGDVAGE-----------P  310
1ndaa.pdb             286  PRTKDLQLQNAGVMIK-NGGVQVDE-----YSRTNVSNIYAIGDVTNR-----------V  328
1npx.pdb              246  PNTAWLK-G--TLELHPNGLIKTDE-----YMRTSEPDVFAVGDATLIKYNPADTEV-NI  296
1ojt.pdb              286  PNGKLISAEKAGVAVTDRGFIEVDK-----QMRTNVPHIYAIGDIVGQ-----------P  329
1trb.pdb              247  PNTAIFE-G--QLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMD----------HIY  292
2tpra.pdb             288  PRSQTLQLEKAGVEVAKNGAIKVDA-----YSKTNVDNIYAIGDVTDR-----------V  331
3grs.pdb              276  PNTKDLSLNKLGIQTDDKGHIIVDE-----FQNTNVKGIYAVGDVCGK-----------A  319
3lada.pdb             280  PVTTDLLAADSGVTLDERGFIYVDD-----YCATSVPGVYAIGDVVRG-----------A  323
                           P                 g i  d         T      A GD                

1ebda.pdb             314  ALAHKASYEGKVAAEAIAGHP--SAVDYVAIPAVVFSD-PECASVGYFEQQAKDEGI--D  368
1gera.pdb             307  ELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSH-PPIGTVGLTEPQAREQYGDDQ  365
1lpfa.pdb             324  MLAHKASEEGVMVAERIAGHK--AQMNYDLIPSVIYTH-PEIAWVGKTEQTLKAEGV--E  378
1lvl.pdb              311  MLAHRAMAQGEMVAEIIAGKA--RRFEPAAIAAVCFTD-PEVVVVGKTPEQASQQGL--D  365
1ndaa.pdb             329  MLTPVAINEAAALVDTVFGTNP-RKTDHTRVASAVFSI-PPIGTCGLIEEVASKRYE--V  384
1npx.pdb              297  ALATNARKQGRFAVKNLEEP-V-KPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGK--E  352
1ojt.pdb              330  MLAHKAVHEGHVAAENCAGHK--AYFDARVIPGVAYTS-PEVAWVGETELSAKASAR--K  384
1trb.pdb              293  RQAITSAGTGCMAALDAE------------------------------------------  310
2tpra.pdb             332  MLTPVAINEGAAFVDTVFANKP-RATDHTKVACAVFSI-PPMGVCGYVEEDAAKKYD--Q  387
3grs.pdb              320  LLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSH-PPIGTVGLTEDEAIHKYGIEN  378
3lada.pdb             324  MLAHKASEEGVVVAERIAGHK--AQMNYDLIPAVIYTH-PEIAGVGKTEQALKAEGV--A  378
                            l   a   g                                                  

1ebda.pdb             369  VIAAKFPFAANGRALALND--TDGFLKLVVRKEDGVIIGAQIIG-PNASDMIAELGLAIE  425
1gera.pdb             366  VKVYKSSF-TAMYTAVTTH-RQPCRMKLVCVGSEEKIVGIHGIG-FGMDEMLQGFAVALK  422
1lpfa.pdb             379  VNVGTFPFTTSGRAMAAND--TTGLVKVIADAKTDRVLGVHVIG-PSAAELVQQGAIGME  435
1lvl.pdb              366  CIVAQFPFAANGRAMSLES--KSGFVRVVARRDNHLILGWQAVG-VAVSELSTAFAQSLE  422
1ndaa.pdb             385  VAVYLSSF-TPLMHNISGSKYKTFVAKIITNHSDGTVLGVHLLG-DNAPEIIQGVGICLK  442
1npx.pdb              353  TKAVTVVE-DYL-MDFNPD-KQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQ  409
1ojt.pdb              385  ITKANFPWAASGRAIANGC--DKPFTKLIFDAETGRIIGGGIVG-PNGGDMIGEVCLAIE  441
1trb.pdb              311  ---------------------------------------------------------RYL  313
2tpra.pdb             388  VAVYESSF-TPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLG-DSSPEIIQSVAICLK  445
3grs.pdb              379  VKTYSTSF-TPMYHAVTKR-KTKCVMKMVCANKEEKVVGIHMQG-LGCDEMLQGFAVAVK  435
3lada.pdb             379  INVGVFPFAASGRAMAAND--TAGFVKVIADAKTDRVLGVHVIG-PSAAELVQQGAIAME  435
                                                                                       

1ebda.pdb             426  AGMTAEDIALTIHAHP-------TLGEIAMEA------AEVAL---------------  455
1gera.pdb             423  MGATKKDFDNTVAIHP-------TAAEEFVTM------R-------------------  448
1lpfa.pdb             436  FGTSAEDLGMMVFSHP-------TLSEALHEA------ALAVNGHAIHI----A----  472
1lvl.pdb              423  MGACLEDVAGTIHAHP-------TLGEAVQEA------ALRALGHALHI---------  458
1ndaa.pdb             443  LNAKISDFYNTIGVHP-------TSAEELCSM------RTPS-YYYVKGEKME-----  481
1npx.pdb              410  AKMTIEDLAYADFFFQPAFDKPWNIINTAALEAVKQER--------------------  447
1ojt.pdb              442  MGCDAADIGKTIHPHP-------TLGESIGMA------AEVALGTCTDL----PPQKK  482
1trb.pdb              314  DGL-------------------------------------------------------  316
2tpra.pdb             446  MGAKISDVYNTIGVHP-------TSAEELCSM------RTPA-YFYEKGKR-------  482
3grs.pdb              436  MGATKADFDNTVAIHP-------TSSEELVTL------R-------------------  461
3lada.pdb             436  FGTSAEDLGMMVFAHP-------ALSEALHEA------ALAVSGHAIHV----A----  472
                                                                                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################