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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 10:19:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/helicase_C.html
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#====================================
# Aligned_structures: 5
#   1: 1c4oa.pdb
#   2: 1d9xa.pdb
#   3: 1fuka.pdb
#   4: 1heia.pdb
#   5: 1hv8a.pdb
#
# Length:        249
# Identity:        5/249 (  2.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     13/249 (  5.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          149/249 ( 59.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1c4oa.pdb               1  --------TGLLDPLVR--VK-PTEN---------QILDLMEGIR--ER-AARGERTLVT   37
1d9xa.pdb               1  --------TGLLDPTID--VR-PTKG---------QIDDLIGEIR--ER-VERNERTLVT   37
1fuka.pdb               1  -----------IKQFYV--NVEEEEY---------KYECLTDLYD--SISV---TQAVIF   33
1heia.pdb               1  PGSVTVSH--P-NIEEV--AL-STTGEIPFYGKAI----PLEVIK-----G---GRHLIF   42
1hv8a.pdb               1  -------N---ANIEQSYVEV-NENE---------RFEALCRLLKNK---E---FYGLVF   34
                                                                  l                 l  

1c4oa.pdb              38  VLTVRMAEELTSFLVEHGIRARYLHHELDA---FKRQALIRDLRLGHYDCLVGIN--LLR   92
1d9xa.pdb              38  TLTKKMAEDLTDYLKEAGIKVAYLHSEIKT---LERIEIIRDLRLGKYDVLVGIN--LLR   92
1fuka.pdb              34  CNTRRKVEELTTKLRNDKFTVSAIYSDLPQ---QERDTIMKEFRSGSSRILISTDLLARG   90
1heia.pdb              43  CHSKKKCDELAAKLVALGINAVAYYRGLDVSVI----------PTNGDVVVVSTDA-LMT   91
1hv8a.pdb              35  CKTKRDTKELAS-LRDIGFKAGAIHGDLSQ---SQREKVIRLFKQKKIRILIATDV-SRG   89
                             t     eL   L   g         l                      l         

1c4oa.pdb              93  E-GLDIPEVSLVAILD-AD--------------------KEGFLRSERSLIQTIG--RAA  128
1d9xa.pdb              93  E-GLDIPEVSLVAILD-AD--------------------KEGFLRSERSLIQTIG--RAA  128
1fuka.pdb              91  I---DVQQVSLVINYD-L-------------------------PANKENYIHRIGRG---  118
1heia.pdb              92  G-F--TGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLP-----QDAVSRTQRRG--RTG  141
1hv8a.pdb              90  ID---VNDLNCVINYH-L-------------------------PQNPE-SYHRIG--RTG  117
                                      V                                         iG     

1c4oa.pdb             129  RN--ARGEVWLYA-DR--VS-EAMQRAIEE-TNRRRALQEAYNLEHGITPET--------  173
1d9xa.pdb             129  RN--ANGHVIMYA-DT--IT-KSMEIAIQE-TKRRRAIQEEYNRKHGIVPRT--------  173
1fuka.pdb             119  ----G-GVAINFV-TNED-V-GAMRELEKFYS--------------TQIEELPSDIATLL  156
1heia.pdb             142  RG--KPGIYRFVAP-----GE---------------------------------------  155
1hv8a.pdb             118  RAGKK-GKAISII-NRRE-Y-KKLRYIERA-K--------------LKIKKL-K------  151
                                 G                                                     

1c4oa.pdb             174  -V-------  174
1d9xa.pdb             174  -VKKEIRDV  181
1fuka.pdb             157  N--------  157
1heia.pdb                  ---------     
1hv8a.pdb                  ---------     
                                    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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