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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:31:20 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/hemocyan.html
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#====================================
# Aligned_structures: 2
#   1: 1hc1.pdb
#   2: 1lla.pdb
#
# Length:        667
# Identity:      200/667 ( 30.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    200/667 ( 30.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          100/667 ( 15.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1hc1.pdb                1  TGNAQKQQDINHLLDKIYEPTKYPDLKDIAENFNPLGDTSIYNDHGAAV---ETLMKELN   57
1lla.pdb                1  --LHDKQIRICHLFEQLSSA-----------------------------THSDRLKNVG-   28
                                KQ  I HL                                         L     

1hc1.pdb               58  DHRLLEQRHWYSLFNTRQRKEALMLFAVLNQCKEWYCFRSNAAYFRERMNEGEFVYALYV  117
1lla.pdb               29  ---KLQPGAIFSCFHPDHLEEARHLYEVFWEAGDFNDFIEIAKEARTFVNEGLFAFAAEV   85
                               L      S F      EA  L  V         F   A   R   NEG F  A  V

1hc1.pdb              118  SVIHSKLGDGIVLPPLYQITPHMFTNSEVIDKAYSAKMTQKPGTFNVSF----KNREQRV  173
1lla.pdb               86  AVLHRDDCKGLYVPPVQEIFPDKFIPSAAINEAFKK---ESPILVDV--TGNILDPEYRL  140
                            V H     G   PP   I P  F  S  I  A        P    V         E R 

1hc1.pdb              174  AYFGEDIGMNIHHVTWHMDFPFWWEDS-YGYHLDRKGELFFWVHHQLTARFDFERLSNWL  232
1lla.pdb              141  AYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFYYMHQQMCARYDCERLSNGM  200
                           AY  ED G N HH  WH   P  W     G   DRKGELF   H Q  AR D ERLSN  

1hc1.pdb              233  DPVDELHW-DRIIREGFAPLTSYK-Y-GGEFPVRPDNIHFEDVDGVAHVHDLEITESRIH  289
1lla.pdb              201  HRMLPFNNFDEPLA-GYAPHLTHVASGK-YYSPRPDGLKLRDL-GDIEISEMVRMRERIL  257
                                    D     G AP              RPD     D  G            RI 

1hc1.pdb              290  EAIDHGYITDSDGHTIDIRQPKGIELLGDIIESSKYSSNVQYYGSLHNTAHVMLGRQGDP  349
1lla.pdb              258  DSIHLGYVISEDGSHKTLDELHGTDILGALVESSYESVNHEYYGNLHNWGHVTMARIHDP  317
                             I  GY    DG         G   LG   ESS  S N  YYG LHN  HV   R  DP

1hc1.pdb              350  HGKFNLPPGVMEHFETATRDPSFFRLHKYMDNIFKKHTDSFPPYTHDNLEFSGMVVNGVA  409
1lla.pdb              318  DGRFHEEPGVMSDTSTSLRDPIFYNWHRFIDNIFHEYKNTLKPYDHDVLNFPDIQVQDVT  377
                            G F   PGVM    T  RDP F   H   DNIF        PY HD L F    V  V 

1hc1.pdb              410  IDG----ELITFFDEFQYSLINAVDSGENIEDVEINARVHRLNHNEFTYKITMSNNNDGE  465
1lla.pdb              378  LHARVDNVVHTFMREQELELKHGIN-PGNA--RSIKARYYHLDHEPFSYAVNVQNNSASD  434
                                     TF  E    L        N     I AR   L H  F Y     NN    

1hc1.pdb              466  RLATFRIFLCPIEDNNGITLTLDEARWFCIELDKFFQKVPSGPETIERSSKDSSVTVPDM  525
1lla.pdb              435  KHATVRIFLAPKYDELGNEIKADELRRTAIELDKFKTDLHPGKNTVVRHSLDSSVTLSHQ  494
                             AT RIFL P  D  G     DE R   IELDKF      G  T  R S DSSVT    

1hc1.pdb              526  PSFQSLKEQADNAVNGGLDLSA----YERSCGIPDRMLLPKSKPEGMEFNLYVAVTDGDK  581
1lla.pdb              495  PTFEDLLHG-------------VGLSEYCSCGWPSHLLVPKGNIKGMEYHLFVMLTDWDK  541
                           P F  L                       SCG P   L PK    GME  L V  TD DK

1hc1.pdb              582  DTEGHHAQCG------------VHGEAYPDNRPLGYPLERRIPDE--RVIDGVSNIKHVV  627
1lla.pdb              542  DK-V------SVACVDAVSYCGARDHKYPDKKPMGFPFDRPIHTEHISD-FLTNNMFIKD  593
                           D                          YPD  P G P  R I  E         N     

1hc1.pdb              628  VKIVHHL  634
1lla.pdb              594  IKIKFHE  600
                            KI  H 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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