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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:32:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/hexokinase.html
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#====================================
# Aligned_structures: 3
#   1: 1bdg.pdb
#   2: 1hkca1.pdb
#   3: 1hkca2.pdb
#
# Length:        461
# Identity:      146/461 ( 31.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    315/461 ( 68.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           30/461 (  6.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bdg.pdb                1  FSDQQLFEKVVEILKPFDLSVVDYEEICDRMGESMRLGLQKSTNEKSSIKMFPSYVTKTP   60
1hkca1.pdb              1  -----QHRQIEETLAHFHLTKDMLLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTP   55
1hkca2.pdb              1  --D-DQVKKIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIP   57
                                q  ki e L  f Ls   l ei  Rmr eM lGL k tn  a vKMlPsfVr tP

1bdg.pdb               61  NGTETGNFLALDLGGTNYRVLSVTLEGG--KSPRIQERTYCIPAEKMSGSGTELFKYIAE  118
1hkca1.pdb             56  DGTENGDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVS  115
1hkca2.pdb             58  DGSEKGDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAE  117
                           dGtE GdFlALDLGGtnfRvL V    g    v m    Y iP eim GsG eLFdhiae

1bdg.pdb              119  TLADFLENNGMKDKKFDLGFTFSFPCVQKGLTHATLVRWTKGFSADGVEGHNVAELLQTE  178
1hkca1.pdb            116  CISDFLDYMGIKGPRMPLGFTFSFPCQQTSLDAGILITWTKGFKATDCVGHDVVTLLRDA  175
1hkca2.pdb            118  CLGDFMEKRKIKDKKLPVGFTFSFPCQQSKIDEAILITWTKRFKASGVEGADVVKLLNKA  177
                           cl DFle  giKdkk plGFTFSFPCqQ  ld aiLitWTKgFkA gveGhdVv LL  a

1bdg.pdb              179  LDKRELNVKC-VAVVNDTVGTLASCALEDPKCAVGLIVGTGTNVAYIEDSSKVELMDGVK  237
1hkca1.pdb            176  IKRREEFDLDVVAVVNDTVGTMMTCAYEEPTCEVGLIVGTGSNACYMEEMKNVEMVE-GD  234
1hkca2.pdb            178  IKKRGDYDANIVAVVNDTVGTMMTCGYDDQHCEVGLIIGTGTNACYMEELRHIDLVE-GD  236
                           ikkRe  d   VAVVNDTVGTmmtCayedp CeVGLIvGTGtNacYmEe   velve gd

1bdg.pdb              238  EPEVVINTEWGAFGEKGELDCWRTQFDKSMDIDSLHPGKQLYEKMVSGMYLGELVRHIIV  297
1hkca1.pdb            235  QGQMCINMEWGAFGDNGCLDDIRTHYDRLVNEYSLNAGKQRYEKMISGMYLGEIVRNILI  294
1hkca2.pdb            237  EGRMCINTEWGAFGDDGSLEDIRTEFDREIDRGSLNPGKQLFEKMVSGMYLGELVRLILV  296
                           eg mcINtEWGAFGd G LddiRT fDr  d  SLnpGKQlyEKMvSGMYLGElVR Ilv

1bdg.pdb              298  YLVEQKILFRGDLPERLKVRNSLLTRYLTDVERDPAHL-LYNTHYMLTDDLHVPVVEPID  356
1hkca1.pdb            295  DFTKKGFLFRGQISETLKTRGIFETKFLSQIES-DR-LALLQVRAILQQL-G-LNSTCDD  350
1hkca2.pdb            297  KMAKEGLLFEGRITPELLTRGKFNTSDVSAIEKN-K-EGLHNAKEILTRL-G-VEPSDDD  352
                              k g LFrG i e LktRg f T  ls iE     l L n   iLt l g      dD

1bdg.pdb              357  NRIVRYACEMVVKRAAYLAGAGIACILRRINR-------SEVTVGVDGSLYKFHPKFCER  409
1hkca1.pdb            351  SILVKTVCGVVSRRAAQLCGAGMAAVVDKIR-ENRGLDRLNVTVGVDGTLYKLHPHFSRI  409
1hkca2.pdb            353  CVSVQHVCTIVSFRSANLVAATLGAILNRLR-DNKGTPRLRTTVGVDGSLYKTHPQYSRR  411
                              V  vC  Vs RaA L gAg aail rir        l vTVGVDGsLYK HP fsrr

1bdg.pdb              410  MTDMVDKLKPKNTRFCLRLSEDGSGKGAAAIAASC------  444
1hkca1.pdb            410  MHQTVKELS-PKCNVSFLLSEDGSGKGAALITAVGVRLRTE  449
1hkca2.pdb            412  FHKTLRRLV-PDSDVRFLLSESGSGKGAAMVTAVAYRLAE-  450
                           mh tv  L  p   v flLSEdGSGKGAA itAv       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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