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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:38:46 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/hsp90.html
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#====================================
# Aligned_structures: 2
#   1: 1ah6.pdb
#   2: 1yer.pdb
#
# Length:        213
# Identity:      145/213 ( 68.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    145/213 ( 68.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            6/213 (  2.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ah6.pdb                1  ASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPD   60
1yer.pdb                1  -VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKE   59
                             ETF FQAEI QLMSLIINT YSNKEIFLRELISN SDALDKIRY  L DP  L     

1ah6.pdb               61  LFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFG  120
1yer.pdb               60  LHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFG  119
                           L I   P      L I D GIGMTKA LINNLGTIAKSGTKAFMEAL AGAD SMIGQFG

1ah6.pdb              121  VGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQ  180
1yer.pdb              120  VGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTG-EPMGRGTKVILHLKEDQ  178
                           VGFYS  LVA  V VI K NDDEQY WES AGGSFTV  D   E  GRGT   L LK DQ

1ah6.pdb              181  LEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVE  213
1yer.pdb              179  TEYLEERRIKEIVKKHSQFIGYPITLFVE----  207
                            EYLEE RIKE  K HS F  YPI L V     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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