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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 23:38:20 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/igcon.html
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#====================================
# Aligned_structures: 12
#   1: 1cqka.pdb
#   2: 1dfblc.pdb
#   3: 1fc1ac1.pdb
#   4: 1fc1ac2.pdb
#   5: 1mamhc.pdb
#   6: 1pfc.pdb
#   7: 2fb4hc.pdb
#   8: 2fb4lc.pdb
#   9: 2fbjhc.pdb
#  10: 2fbjlc.pdb
#  11: 3hflhc.pdb
#  12: 4fabhc.pdb
#
# Length:        129
# Identity:        3/129 (  2.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     10/129 (  7.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           49/129 ( 38.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cqka.pdb               1  PAAPQVYTIPPPLEQ-M-AKD--LVSLTCMITDFF--PEDITVEWQW-NG-QPAE-----   47
1dfblc.pdb              1  ---PSVFIFPPSDEQ-L-KSG--TASVVCLLNNFY--PREAKVQWKV-DN-ALQS----G   45
1fc1ac1.pdb             1  ---PSVFLFPPKPKD-T-LMISRTPEVTCVVVDVSHEDPQVKFNWYV-DG-VQVH----N   49
1fc1ac2.pdb             1  ---PQVYTLPPSREE-M-TKN--QVSLTCLVKGFY--PSDIAVEWES-NG-QPEN-----   44
1mamhc.pdb              1  ---PSVYPLAPGCGDTT--GS--SVTLGCLVKGYF--PESVTVTWNS---G---S--LSS   43
1pfc.pdb                1  ---PEVYLLPPPRNE-LS-KK--KVSLTCMITGFY--PADINVEWD---SS-EPS-----   42
2fb4hc.pdb              1  ---PSVFPLAPSSKS-T-SGG--TAALGCLVKDYF--PQPVTVSWN---S-GALT----S   43
2fb4lc.pdb              1  ---PTVTLFPPSSEE-L-QAN--KATLVCLISDFY--PGAVTVAWKA-DG-SPVK----A   45
2fbjhc.pdb              1  ---PTIYPLTLPPAL-S--SD--PVIIGCLIHDYF--PSGTMNVTWGK--S---G----K   41
2fbjlc.pdb              1  ---PTVSIFPPSSEQ-L-TSG--GASVVCFLNNFY--PKDINVKWKI-DG-SERQ----N   45
3hflhc.pdb              1  ---PSVYPLAPGS-AA-QTNS--MVTLGCLVKGYF--PEPVTVTWN---S-GSLS----S   43
4fabhc.pdb              1  ---PSVYPLAPVCGDTT--GS--SVTLGCLVKGYF--PEPVTLTWNS--------GSLSS   43
                              P v    p                 C        p      w               

1cqka.pdb              48  --NYKNTQPIMD-TDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE-GLHNHHTEKSLSH--  101
1dfblc.pdb             46  --NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ-GLSS-PVTKSFNR-G  100
1fc1ac1.pdb            50  -AKTKPREQQY---NSTYRVVSVLTVLHQNWLDGKEYKCKVSNK-ALPA-PIEKTISK-A  102
1fc1ac2.pdb            45  --NYKTTPPVLD-SDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE-ALHNHYTQKSLSL--   98
1mamhc.pdb             44  --SVHTFPALLQ--SGLYTMSSSVTVPSSTWPSQT-VTCSVAHP-A-SS-TTVDKKLE--   93
1pfc.pdb               43  --DYKNTPPVFD-TDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA--LPNHVIQKSISRS   97
2fb4hc.pdb             44  --GVHTFPAVLQ-SSGLYSLSSVVTVPSSSLGTQT-YICNVNHK-PSNT-KVDKRVEP-K   96
2fb4lc.pdb             46  --GVETTKPSKQ-SNNKYAASSYLSLTPEQWKSHRSYSCQVTHE---GS-TVEKTVAP-T   97
2fbjhc.pdb             42  DITTVNFPPALA-SGGRYTMSNQLTLPAVECPEGESVKCSVQHD-S-NP-VQELDVNC-S   96
2fbjlc.pdb             46  --GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHK-TSTS-PIVKSFNR-N  100
3hflhc.pdb             44  --GVHTFPAVLQ--SDLYTLSSSVTVPSSPRPSET-VTCNVAHP-ASST-KVDKKI----   92
4fabhc.pdb             44  --GVHTFPAVLQ--SDLYTLSSSVTVTSSTWPSQS-ITCNVAHP-ASST-KVDKKIE---   93
                                                s                C v h                 

1cqka.pdb                  ---------     
1dfblc.pdb            101  --E---C--  102
1fc1ac1.pdb           103  --K--G---  104
1fc1ac2.pdb                ---------     
1mamhc.pdb                 ---------     
1pfc.pdb               98  -------PG   99
2fb4hc.pdb             97  SC-------   98
2fb4lc.pdb             98  --ECS----  100
2fbjhc.pdb             97  G--------   97
2fbjlc.pdb            101  --E---C--  102
3hflhc.pdb                 ---------     
4fabhc.pdb                 ---------     
                                    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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