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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 23:28:20 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/igvar-h.html
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#====================================
# Aligned_structures: 21
#   1: 1bafhv.pdb
#   2: 1bbdhv.pdb
#   3: 1bvkb.pdb
#   4: 1dfbhv.pdb
#   5: 1faihv.pdb
#   6: 1fdlhv.pdb
#   7: 1hilhv.pdb
#   8: 1igfhv.pdb
#   9: 1igmhv.pdb
#  10: 1jhlhv.pdb
#  11: 1mamhv.pdb
#  12: 1mcphv.pdb
#  13: 1ncahv.pdb
#  14: 2fb4hv.pdb
#  15: 2fbjhv.pdb
#  16: 3hflhv.pdb
#  17: 3hfmhv.pdb
#  18: 4fabhv.pdb
#  19: 6fabhv.pdb
#  20: 7fabhv.pdb
#  21: 8fabhv.pdb
#
# Length:        142
# Identity:       10/142 (  7.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     19/142 ( 13.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           33/142 ( 23.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bafhv.pdb              1  DVQLQESGPGLVKPSQSQSLTCTVTGYSITSDYAWNWIRQFPGNKLEWMGYMSYS--G-S   57
1bbdhv.pdb              1  EVQLQQSGAELVRPGASVKLSCTTSGFNIK-DIYIHWVKQRPEQGLEWIGRLDPA--NGY   57
1bvkb.pdb               1  QVQLQESGPGLVRPSQTLSLTCTVSGFSLT-GYGVNWVRQPPGRGLEWIGMIWGD--G-N   56
1dfbhv.pdb              1  EVQLVESGGGLVQPGRSLRLSCAASGFTFN-DYAMHWVRQAPGKGLEWVSGISWD--SSS   57
1faihv.pdb              1  QVQLQQSGAELVRAGSSVKMSCKASGYTFT-SYGVNWVKQRPGQGLEWIGYINPG--KGY   57
1fdlhv.pdb              1  QVQLKESGPGLVAPSQSLSITCTVSGFSLT-GYGVNWVRQPPGKGLEWLGMIWGD--G-N   56
1hilhv.pdb              1  EVQLVESGGDLVKPGGSLKLSCAASGFSFS-SYGMSWVRQTPDKRLEWVATISNG--GGY   57
1igfhv.pdb              1  EVQLVESGGDLVKPGGSLKLSCAASGFTFS-RCAMSWVRQTPEKRLEWVAGISSG--GSY   57
1igmhv.pdb              1  EVHLLESGGNLVQPGGSLRLSCAASGFTFN-IFVMSWVRQAPGKGLEWVSGVFGS--GGN   57
1jhlhv.pdb              1  QVQLQQSGAELVRPGASVKLSCKASGYTFI-SYWINWVKQRPGQGLEWIGNIYPS--DSY   57
1mamhv.pdb              1  EVKLVESGGGLVQPGGSLRLSCATSGFTFT-DYYMSWVRQPPGKALEWLGFIRNKADGYT   59
1mcphv.pdb              1  EVKLVESGGGLVQPGGSLRLSCATSGFTFS-DFYMEWVRQPPGKRLEWIAASRNKGNKYT   59
1ncahv.pdb              1  QIQLVQSGPELKKPGETVKISCKASGYTFT-NYGMNWVKQAPGKGLEWMGWINTN--TGE   57
2fb4hv.pdb              1  EVQLVQSGGGVVQPGRSLRLSCSSSGFIFS-SYAMYWVRQAPGKGLEWVAIIWDD--GSD   57
2fbjhv.pdb              1  EVKLLESGGGLVQPGGSLKLSCAASGFDFS-KYWMSWVRQAPGKGLEWIGEIHPD--SGT   57
3hflhv.pdb              1  -VQLQQSGAELMKPGASVKISCKASGYTFS-DYWIEWVKQRPGHGLEWIGEILPG--SGS   56
3hfmhv.pdb              1  DVQLQESGPSLVKPSQTLSLTCSVTGDSIT-SDYWSWIRKFPGNRLEYMGYVSYS--G-S   56
4fabhv.pdb              1  EVKLDETGGGLVQPGRPMKLSCVASGFTFS-DYWMNWVRQSPEKGLEWVAQIRNKPYNYE   59
6fabhv.pdb              1  EVQLQQSGVELVRAGSSVKMSCKASGYTFT-SNGINWVKQRPGQGLEWIGYNNPG--NGY   57
7fabhv.pdb              1  AVQLEQSGPGLVRPSQTLSLTCTVSGTSFD-DYYWTWVRQPPGRGLEWIGYVFYT--G-T   56
8fabhv.pdb              1  AVKLVQAGGGVVQPGRSLRLSCIASGFTFS-NYGMHWVRQAPGKGLEWVAVIWYN--GSR   57
                            v L   G             C   G          W  q P   LEw            

1bafhv.pdb             58  TRYNPSLRSRISITRDTSKNQFFLQLKSVTTEDTATYFCARG--------------W-PL  102
1bbdhv.pdb             58  TKYDPKFQGKATITVDTSSNTAYLHLSSLTSEDTAVYYCDGYYSY-Y-----------DM  105
1bvkb.pdb              57  TDYNSALKSRVTMLKDTSKNQFSLRLSSVTAADTAVYYCARERD------------Y-RL  103
1dfbhv.pdb             58  IGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYCVKGRDY-YD-SGGYF-TV-AF  113
1faihv.pdb             58  LSYNEKFKGKTTLTVDRSSSTAYMQLRSLTSEDAAVYFCARSFYG-GS-DL---AVY-YF  111
1fdlhv.pdb             57  TDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERD------------Y-RL  103
1hilhv.pdb             58  TYYPDSVKGRFTISRDNAKNTLYLQMSSLKSEDSAMYYCARRERY----------DE-NG  106
1igfhv.pdb             58  TFYPDTVKGRFIISRNNARNTLSLQMSSLRSEDTAIYYCTRYSSD----------PF-YF  106
1igmhv.pdb             58  TDYADAVKGRFTITRDNSKNTLYLQMNSLRAEDTAIYYCAKHRVS-Y-------VLT-GF  108
1jhlhv.pdb             58  TNYNQKFKDKATLTVDKSSSTAYMQLSSPTSEDSAVYYCTRDDNY-G-----------AM  105
1mamhv.pdb             60  TEYSASVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCTRDP--Y---------GP-A-  106
1mcphv.pdb             60  TEYSASVKGRFIVSRDTSQSILYLQMNALRAEDTAIYYCARNYYGS---------TW-YF  109
1ncahv.pdb             58  PTYGEEFKGRFAFSLETSASTANLQINNLKNEDKATFFCARGEDN-F-------G-S-LS  107
2fb4hv.pdb             58  QHYADSVKGRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARDGGH-GFCSS-A-SCF-GP  113
2fbjhv.pdb             58  INYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHY------------YGYN  105
3hflhv.pdb             57  TNYHERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYCLHGNY--------------DF  102
3hfmhv.pdb             57  TYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANW----------------DG  100
4fabhv.pdb             60  TYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDMGIYYCTGSYY------------G-M-  105
6fabhv.pdb             58  IAYNEKFKGKTTLTVDKSSSTAYMQLRSLTSEDSAVYFCARSEYYGG--------SY-KF  108
7fabhv.pdb             57  TLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADTAVYYCARNLIA-----------G-GI  104
8fabhv.pdb             58  TYYGDSVKGRFTISRDNSKRTLYMQMNSLRTEDTAVYYCARDPDI-------L-TAF-SF  108
                             y                             D   y C                     

1bafhv.pdb            103  AYWGQGTQVSVSEA--KTT--P  120
1bbdhv.pdb            106  DYWGPGTSVTVSSA--KTT--A  123
1bvkb.pdb             104  DYWGQGSLVTVSS---------  116
1dfbhv.pdb            114  DIWGQGTMVTVSSA--STK--G  131
1faihv.pdb            112  DSWGQGTTLTVSSA--KTT--P  129
1fdlhv.pdb            104  DYWGQGTTLTVSSA--STT--P  121
1hilhv.pdb            107  FAYWGQGTLVTVSAA-KTT--A  125
1igfhv.pdb            107  DYWGQGTTLTVSSAK-TTP---  124
1igmhv.pdb            109  DSWGQGTLVTVSSGSASAP-TL  129
1jhlhv.pdb            106  DYWGQGTTVTV-----------  116
1mamhv.pdb            107  AYWGQGTLVTVSAA--KTT--P  124
1mcphv.pdb            110  DVWGAGTTVTVSSE--SAR--N  127
1ncahv.pdb            108  DYWGQGTTLTVSSA--KTT--A  125
2fb4hv.pdb            114  DYWGQGTPVTVSS---------  126
2fbjhv.pdb            106  AYWGQGTLVTVSAE--SAR--N  123
3hflhv.pdb            103  DGWGQGTTLTVSS---------  115
3hfmhv.pdb            101  DYWGQGTLVTVSAA--KTT--P  118
4fabhv.pdb            106  DYWGQGTSVTVSSA--KTT--A  123
6fabhv.pdb            109  DYWGQGTTLTVSSA--KTT--P  126
7fabhv.pdb            105  DVWGQGSLVTVSSA--STK--G  122
8fabhv.pdb            109  DYWGQGVLVTVSSAST--KG--  126
                             wg g    v           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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