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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 12:16:41 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/igvar-l.html
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#====================================
# Aligned_structures: 26
# 1: 1ar1lv.pdb
# 2: 1baflv.pdb
# 3: 1bbdlv.pdb
# 4: 1bvka.pdb
# 5: 1dfblv.pdb
# 6: 1fdllv.pdb
# 7: 1hillv.pdb
# 8: 1igflv.pdb
# 9: 1igmlv.pdb
# 10: 1jhllv.pdb
# 11: 1lvelv.pdb
# 12: 1mamlv.pdb
# 13: 1mcplv.pdb
# 14: 1ncalv.pdb
# 15: 1reilv.pdb
# 16: 2fb4lv.pdb
# 17: 2fbjlv.pdb
# 18: 2mcglv.pdb
# 19: 2rhelv.pdb
# 20: 3bjllv.pdb
# 21: 3hfllv.pdb
# 22: 3hfmlv.pdb
# 23: 4fablv.pdb
# 24: 6fablv.pdb
# 25: 7fablv.pdb
# 26: 8fablv.pdb
#
# Length: 128
# Identity: 15/128 ( 11.7%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 19/128 ( 14.8%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 37/128 ( 28.9%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1ar1lv.pdb 1 D-IELTQTPVSLSASVGETVTITCRASE---NIY------SYLAWYQQKQGKSPQFLVYN 50
1baflv.pdb 1 Q-IVLTQSPAIMSASPGEKVTMTCSASS---SV-------YYMYWYQQKPGSSPRLLIYD 49
1bbdlv.pdb 1 D-IVMTQSPSSLTVTTGEKVTMTCKSSQ---SLLNSRTQKNYLTWYQQKPGQSPKLLIYW 56
1bvka.pdb 1 D-IQMTQSPSSLSASVGDRVTITCRASG---NIH------NYLAWYQQKPGKAPKLLIYY 50
1dfblv.pdb 1 D-IQMTQSPSTLSASVGDRVTITCRASQ---SIS------RWLAWYQQKPGKVPKLLIYK 50
1fdllv.pdb 1 D-IQMTQSPASLSASVGETVTITCRASG---NIH------NYLAWYQQKQGKSPQLLVYY 50
1hillv.pdb 1 D-IVMTQSPSSLTVTAGEKVTMSCTSSQ---SLFNSGKQKNYLTWYQQKPGQPPKVLIYW 56
1igflv.pdb 1 D-VLMTQTPLSLPVSLGDQASISCRSNQ---TILLS-DGDTYLEWYLQKPGQSPKLLIYK 55
1igmlv.pdb 1 D-IQMTQSPSSLSASVGDRVTITCQASQ---DIS------NYLAWYQQKPGKAPELRIYD 50
1jhllv.pdb 1 D-IELTQSPSYLVASPGETITINCRASK---SIS------KSLAWYQEKPGKTNNLLIYS 50
1lvelv.pdb 1 D-IVMTQSPDSLAVSLGERATINCKSSQ---SVLYSSNSKNYLAWYQQKPGQPPKLLIYW 56
1mamlv.pdb 1 D-IQMTQTTSSLSASLGDRVTISCRASQ---DIY------NYLNWYQQKPDGTVKLLIYY 50
1mcplv.pdb 1 D-IVMTQSPSSLSVSAGERVTMSCKSSQ---SLLNSGNQKNFLAWYQQKPGQPPKLLIYG 56
1ncalv.pdb 1 D-IVMTQSPKFMSTSVGDRVTITCKASQ---DVS------TAVVWYQQKPGQSPKLLIYW 50
1reilv.pdb 1 D-IQMTQSPSSLSASVGDRVTITCQASQ---DII------KYLNWYQQTPGKAPKLLIYE 50
2fb4lv.pdb 1 Q-S-VLTQPPSASGTPGQRVTISCSGTSSNIGS-------STVNWYQQLPGMAPKLLIYR 51
2fbjlv.pdb 1 E-IVLTQSPAITAASLGQKVTITCSASS---SV-------SSLHWYQQKSGTSPKPWIYE 49
2mcglv.pdb 1 --S-ALTQPPSASGSLGQSVTISCTGTSSDVGGY------NYVSWYQQHAGKAPKVIIYE 51
2rhelv.pdb 1 -ES-VLTQPPSASGTPGQRVTISCTGSATDIGS-------NSVIWYQQVPGKAPKLLIYY 51
3bjllv.pdb 1 --S-VLTQPPSASGTPGQRVTISCSGSSSNIGE-------NSVTWYQHLSGTAPKLLIYE 50
3hfllv.pdb 1 D-IVLTQSPAIMSASPGEKVTMTCSASS---SV-------NYMYWYQQKSGTSPKRWIYD 49
3hfmlv.pdb 1 D-IVLTQSPATLSVTPGNSVSLSCRASQ---SIG------NNLHWYQQKSHESPRLLIKY 50
4fablv.pdb 1 D-VVMTQTPLSLPVSLGDQASISCRSSQ---SLVHS-QGNTYLRWYLQKPGQSPKVLIYK 55
6fablv.pdb 1 D-IQMTQIPSSLSASLGDRVSISCRASQ---DIN------NFLNWYQQKPDGTIKLLIYF 50
7fablv.pdb 1 -AS-VLTQPPSVSGAPGQRVTISCTGSSSNIGAG------HNVKWYQQLPGTAPKLLI-- 50
8fablv.pdb 1 ----ELTQPPSVSVSPGQTARITCSAN--ALPN-------QYAYWYQQKPGRAPVMVIYK 47
p G C WY
1ar1lv.pdb 51 AKTLGEG-VPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQHHYG--TPPLTFGGGTKLEI 107
1baflv.pdb 50 TSNLASG-VPVRFSGSGSGTSYSLTISRMEAEDAATYYCQQWSS--YPPITFGVGTKLEL 106
1bbdlv.pdb 57 ASTRESG-VPDRFTGSGSGTDFTLSISGVQAEDLAVYYCQNNYN--YP-LTFGAGTKLEL 112
1bvka.pdb 51 TTTLADG-VPSRFSGSGSGTDYTFTISSLQPEDIATYYCQHFWS--TP-RTFGQGTKVEI 106
1dfblv.pdb 51 ASSLESG-VPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYN---S--YSFGPGTKVDI 104
1fdllv.pdb 51 TTTLADG-VPSRFSGSGSGTQYSLKINSLQPEDFGSYYCQHFWS--TP-RTFGGGTKLEI 106
1hillv.pdb 57 ASTRESG-VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYS--NP-LTFGGGTKLEL 112
1igflv.pdb 56 VSNRFSG-VPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSH--VP-PTFGGGTKLEI 111
1igmlv.pdb 51 ASNLETG-VPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYQN--LP-LTFGPGTKVDI 106
1jhllv.pdb 51 GSTLQSG-IPSRFSGSGSGTDFTLTISSLEPEDFAMYICQQHNE--YP-WTFGGGTKLEI 106
1lvelv.pdb 57 ASTRESG-VPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYS--TP-YSFGQGTKLEI 112
1mamlv.pdb 51 TSRLHSG-VPSRFSGSGSGTDYSLTISNLNQEDMATYICQQGNT--LP-FTFGSGTKLEI 106
1mcplv.pdb 57 ASTRESG-VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDHS--YP-LTFGAGTKLEI 112
1ncalv.pdb 51 ASTRHIG-VPDRFAGSGSGTDYTLTISSVQAEDLALYYCQQHYS--PP-WTFGGGTKLEI 106
1reilv.pdb 51 ASNLQAG-VPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQYQS--LP-YTFGQGTKLQI 106
2fb4lv.pdb 52 DAMRPSG-VPDRFSGSKSGASASLAIGGLQSEDETDYYCAAWDVSLNA-YVFGTGTKVTV 109
2fbjlv.pdb 50 ISKLASG-VPARFSGSGSGTSYSLTINTMEAEDAAIYYCQQWTY--PL-ITFGAGTKLEL 105
2mcglv.pdb 52 VNKRPSG-VPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEG-SDN-FVFGTGTKVTV 108
2rhelv.pdb 52 NDLLPSG-VSDRFSASKSGTSASLAISGLESEDEADYYCAAWNDSLDE-PGFGGGTKLTV 109
3bjllv.pdb 51 DNSRASG-VSDRFSASKSGTSASLAISGLQPEDETDYYCAAWDDSLDV-AVFGTGTKVTV 108
3hfllv.pdb 50 TSKLASG-VPVRFSGSGSGTSYSLTISSMETEDAATYYCQQWGR--NP-TFGGG-TKLEI 104
3hfmlv.pdb 51 ASQSISG-IPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNS--WP-YTFGGGTKLEI 106
4fablv.pdb 56 VSNRFSG-VPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTH--VP-WTFGGGTKLEI 111
6fablv.pdb 51 TSRSQSG-VPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQGNA--LP-RTFGGGTKLEI 106
7fablv.pdb 51 ----F--HNNARFSVSKSGTSATLAITGLQAEDEADYYCQSYDR--SL-RVFGGGTKLTV 101
8fablv.pdb 48 DTQRPSG-IPQRFSSSTSGTTVTLTISGVQAEDEADYYCQAWDN--SA-SIFGGGTKLTV 103
RF S SG i eD Y C fG TK
1ar1lv.pdb 108 K------- 108
1baflv.pdb 107 KRADAA-- 112
1bbdlv.pdb 113 KRADAA-- 118
1bvka.pdb 107 KR------ 108
1dfblv.pdb 105 KRTVAA-- 110
1fdllv.pdb 107 KRADAA-- 112
1hillv.pdb 113 KRADAA-- 118
1igflv.pdb 112 KRADAA-- 117
1igmlv.pdb 107 KRTVAA-- 112
1jhllv.pdb 107 KR------ 108
1lvelv.pdb 113 KR------ 114
1mamlv.pdb 107 KRADAA-- 112
1mcplv.pdb 113 KRADAA-- 118
1ncalv.pdb 107 KRADAA-- 112
1reilv.pdb 107 T------- 107
2fb4lv.pdb 110 LGQPKAN- 116
2fbjlv.pdb 106 KRADAA-- 111
2mcglv.pdb 109 LGQPKAN- 115
2rhelv.pdb 110 LGQPK--- 114
3bjllv.pdb 109 LGQPKANP 116
3hfllv.pdb 105 KRAD---- 108
3hfmlv.pdb 107 KRADAA-- 112
4fablv.pdb 112 KRADAA-- 117
6fablv.pdb 107 KRADAA-- 112
7fablv.pdb 102 LRQPKAA- 108
8fablv.pdb 104 LGQPKAA- 110
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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