################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 02:37:18 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/inositol_P.html ################################################################################################ #==================================== # Aligned_structures: 3 # 1: 1inp.pdb # 2: 1qgxa.pdb # 3: 2hhma.pdb # # Length: 492 # Identity: 20/492 ( 4.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 83/492 ( 16.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 288/492 ( 58.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1inp.pdb 1 MS---DILQELLRVSEKAANIARACRQQ--------------------ETLFQLL----- 32 1qgxa.pdb 1 --ALERELLVATQAVRKASLLTKRIQSEV-ISHKDSTTITKND-NSPVTTGDYAAQTIII 56 2hhma.pdb 1 ---WQECMDYAVTLARQAGEVVCEAIKNEM------NVMLKSSPVDLVTATDQKVEKMLI 51 l a rkA tt dq 1inp.pdb 33 ---------IEEKKE--GEKNKKFAVDFKTLADVLVQEVIKE-NMENKFPGLGKKIFGEE 80 1qgxa.pdb 57 NAIKSNFPDDKVVGEESSSG----LSDAFVSGILNEIKANDE-VYNKNYKK--DD-FLFT 108 2hhma.pdb 52 SSIKEKYPSHSFIGEES---------------------VAAGE----------------- 73 gE v e 1inp.pdb 81 SNELTNDLGEKIIM-RLGPTEEETVALLSKVLNGNKLASEALAKVVHQDVFFSDPALDSV 139 1qgxa.pdb 109 NDQ-----------FPLKSLE-DVRQIIDFGN--------------Y-EGGRK------- 134 2hhma.pdb 74 -------------------------------K--------------S-I-LTD------- 79 1inp.pdb 140 EINIPQDILGIWVDPIDSTYQYIKGSADITPNQGIFPSGLQCVTVLIGVYDIQTGVPLMG 199 1qgxa.pdb 135 -------GRFWCLDPIDGTKGFLRG--------------E-QFAVCLALIV--DGVVQLG 170 2hhma.pdb 80 -------NPTWIIDPIDGTTNFVHR-------------FP-FVAVSIGFAV--NKKIEFG 116 w DPIDgT f g vaV ig v gv G 1inp.pdb 200 VINQPFVSQDLH---TRR-------WKGQCYWGLSYLGTNIHSLLPPVSTRSNSEAQSQG 249 1qgxa.pdb 171 CIGCPNLV----LSSYGAQDLKGHESFGYIFRAVR-GLGAFYS--PSSDA---------- 213 2hhma.pdb 117 VVYSCVE--------------------GKMYTARK-GKGAFCN----------------- 138 vi p G y a g gaf s 1inp.pdb 250 TQNP--------SSEGSCRFSVVISTSEK-ETIKG----A----------LSHVC-GERI 285 1qgxa.pdb 214 ----ESWTKIHVRHLKDTK-DMITLEGVE-K---------GHSSHDEQTAIKNKLNISK- 257 2hhma.pdb 139 ------GQKLQVSQQEDIT-KSLLVTELGSSRTPETVRM----VLSNMEKLFCIP-VHGI 186 s d t l 1inp.pdb 286 FRAAGAGYKSLCVILGLADIYIFSED-----TTFKWDSCAAHAILRAMGGGMVDLKECLE 340 1qgxa.pdb 258 SLHLDSQAKYCLLALGLADVYLRLP-IKLSYQEKIWDHAAGNVIVHEAGGIHTDAMED-- 314 2hhma.pdb 187 RSVGTAAVNMCLVATGGADAYYEM-------GIHCWDVAGAGIIVTEAGGVLMDVTG--- 236 a k clvalGlAD Y WD aaa Iv eaGG D e 1inp.pdb 341 RNPDTGLDLPQLVYHVGNEGAAGVDQWANK-GGL-IAYRSEKQLETFLSR-------L-- 389 1qgxa.pdb 315 ---------VPLDFGNG---------RTLATKGVIASSGPRELHDLVVSTS------C-- 348 2hhma.pdb 237 ---------GPFD---------------LMSRRV-IAANNRILAERIAKEIQVIPLQRDD 271 pld l gv ia r l e s 1inp.pdb 390 -LQHLAPVATHT 400 1qgxa.pdb 349 -DVIQSR----- 354 2hhma.pdb 272 E----------- 272 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################