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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:45:23 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/isoamylase_N.html
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#====================================
# Aligned_structures: 2
#   1: 1bf2.pdb
#   2: 1ehaa.pdb
#
# Length:        167
# Identity:       10/167 (  6.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     10/167 (  6.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           82/167 ( 49.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bf2.pdb                1  AINSM-SLGASYDAQQANITFRVYSSQATRIVLYLYSAGYGVQESATYTLSPAGSGVWAV   59
1ehaa.pdb               1  -----TFA-YKID--GNEVIFTLWAPYQKSVKLKVLE-------KGLYEMERDEKGYFTI   45
                                       D       F           L              Y       G    

1bf2.pdb               60  TVPVSSIKAAGITGAVYYGYRAWGPNWPYASNWGKGSQAGFVSDVDANGDRFNPNKLLLD  119
1ehaa.pdb              46  TLNN-------VKVRDRYKYVLD-----------------------------D-ASEIPD   68
                           T                Y Y                                       D

1bf2.pdb              120  PYAQEVSQDPLNPSNQNGNVFASGASYRTTDSGIYAPKGVVLV----  162
1ehaa.pdb              69  PASRYQPEG------------------------V-HGPSQIIQESKE   90
                           P                                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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