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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 07:39:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/laminin_G.html
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#====================================
# Aligned_structures: 4
#   1: 1c4ra.pdb
#   2: 1d2sa.pdb
#   3: 1dyka1.pdb
#   4: 1dyka2.pdb
#
# Length:        234
# Identity:       10/234 (  4.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     25/234 ( 10.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           96/234 ( 41.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1c4ra.pdb               1  H------------AGTTYIFS-K---GGGQITYKWPPND-RPSTRADRLAIGFSTVQKEA   43
1d2sa.pdb               1  --------------PPAVHLSNGPG-QEPIAVMTFDLTK-IT-K--TSSSFEVRTWDPEG   41
1dyka1.pdb              1  -HGPCVAESEPALLTGSKQFGL--S-RNSHIAIAFDDTK-V--KNRLTIELEVRTEAESG   53
1dyka2.pdb              1  -----------N-AESGTYFD----GTG-FAKAVGG--FKV--GLDLLVEFEFRTTRPTG   39
                                              f                               e rT    g

1c4ra.pdb              44  VLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESN--A-IINDGKYHVVRFTRS  100
1d2sa.pdb              42  VIFYGDTNPK-DDWFMLGLRDGRPEIQLHNHWAQLTVG-AG--P-RLDDGRWHQVEVKME   96
1dyka1.pdb             54  LLFYMARINH-ADFATVQLRNGFPYFSYDLGSGDTSTMIP---T-KINDGQWHKIKIVRV  108
1dyka2.pdb             40  VLLGVSS-QK-MDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKI   97
                           vl          D        g        g                 dG wH v     

1c4ra.pdb             101  GGNATLQVDSWPVI-ERYPAGRQLTIFNS-----QATIIIGGK------E---------Q  139
1d2sa.pdb              97  GDSVLLEVDGE-EVLRLRQ----------VSGHPIMRIALGGLLF-PASN----LRLP-L  139
1dyka1.pdb            109  KQEGILYVDDA-SS-QTISPKKA-DILDV-----VGILYVGGLPINY---TTRRIG--PV  155
1dyka2.pdb             98  KNRLELVVDGN-QV-DAQSPNSASTSADT-----NDPVFVGGFPGGL---NQFGLT---T  144
                                L VD                               GG                  

1c4ra.pdb             140  GQPFQGQLSGLYYN--G-----LKVLNMAAEND--ANIAIVGNVRLVGEV----  180
1d2sa.pdb             140  VPALDGCLRRDSWL--D-----K----------QAEISASAP-TSLRSC-----  170
1dyka1.pdb            156  TYSLDGCVRNLHMEQ-A----PVDLD--------QP--TSSFHVGTCFA-----  189
1dyka2.pdb            145  NIRFRGCIRSLKLTKGTGKPLEVNFA--------KA--LELRGVQPV---SCPT  185
                                Gc r l                                v          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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