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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:56:35 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ligase-CoA_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1eudb.pdb
#   2: 2scub.pdb
#
# Length:        399
# Identity:      164/399 ( 41.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    164/399 ( 41.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           20/399 (  5.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1eudb.pdb               1  MVNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVF   60
2scub.pdb               1  -MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAG-   58
                             NL EYQ K L    G          T  EA EAA    A   V K Q  AGGRGK   

1eudb.pdb              61  SSGLKG-GVHLTKDPEVVGQLAKQMIGYN--LATKQTPKEGV-KVNKVMVAEALDISRET  116
2scub.pdb              59  ------GVKVVN--SKEDIRAFAENWL-GKRLVTYQTD-ANGQPVNQILVEAATDIAKEL  108
                                                          L T QT       VN   V  A DI  E 

1eudb.pdb             117  YLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLG  176
2scub.pdb             109  YLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLG  168
                           YL    DRS    V   S  GGV IE VA   P LI K   D   G    Q    A  LG

1eudb.pdb             177  FLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKD  236
2scub.pdb             169  LEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD  228
                             G L  Q       L   FL  D    E NP   T  G   C D K   D NA FRQ D

1eudb.pdb             237  IFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLD  296
2scub.pdb             229  LREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLD  288
                              M D S   P E  AA   L Y  LDGNI C VNGAGLAM T DI  L GG PANFLD

1eudb.pdb             297  LGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVN-AIIANGITKA-RELELKVPLVVR  354
2scub.pdb             289  VGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVR  348
                            GGG     V  AFK    D KV A LVNIFGGIV    IA GI  A  E    VP VVR

1eudb.pdb             355  LEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVASVTK  393
2scub.pdb             349  LEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAV--  385
                           LEG N       L  SGL I  A  L DAA   VA V  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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