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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:58:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/lipoxygenase.html
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#====================================
# Aligned_structures: 2
#   1: 1byt.pdb
#   2: 1yge.pdb
#
# Length:        850
# Identity:      570/850 ( 67.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    570/850 ( 67.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           25/850 (  2.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1byt.pdb                1  ----GHKIKGTVVLMRKNVLDV-NSVTSVTLD--TLTAFLGRSVSLQLISATKADANGKG   53
1yge.pdb                1  MFSAGHKIKGTVVLMPKNELEVNPDGSA----VDNLNAFLGRSVSLQLISATKADAHGKG   56
                               GHKIKGTVVLM KN L V             L AFLGRSVSLQLISATKADA GKG

1byt.pdb               54  KLGKATFLEGIITSLPTLGAGQSAFKINFEWDDGSGIPGAFYIKNFMQTEFFLVSLTLED  113
1yge.pdb               57  KVGKDTFLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEA  116
                           K GK TFLEGI TSLPTLGAG SAF I FEWD   GIPGAFYIKN MQ EFFL SLTLE 

1byt.pdb              114  IPNHGSIHFVCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGE  173
1yge.pdb              117  ISNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGE  176
                           I N G I FVCNSW YN KL KS RIFFAN TY PSETPAPLV YREEEL  LRG GTGE

1byt.pdb              174  RKEWERIYDYDVYNDLGDPDKGENHARPVLGGNDTFPYPRRGRTGRKPTRKDPNSESRSN  233
1yge.pdb              177  RKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGE  236
                           RKE  RIYDYDVYNDLG PDK E  ARPVLGG  TFPYPRRGRTGR PT  DPN E    

1byt.pdb              234  DVYLPRDEAFGHLKSSDFLTYGLKSVSQNVLPLLQSAFDLNFTPREFDSFDEVHGLYSGG  293
1yge.pdb              237  VFYVPRDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGG  296
                             Y PRDE  GHLKS D L  G KS SQ V P   SAFDL  TP EF SF  VH LY GG

1byt.pdb              294  IKLPTDIISKISPLPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAREMLAGVNP  353
1yge.pdb              297  IKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNP  356
                           IKLP D IS I PLPV KE  RTDG   LKFP P V QVS SAWMTDEEFAREM AGVNP

1byt.pdb              354  NLIRCLKDFPPRSKLDSQVYGD--HTSQITKEHLEPNLEGLTVDEAIQNKRLFLLDHHDP  411
1yge.pdb              357  CVIRGLEEFPPKSNLDP--AIYGDQSSKITADSLD-L-DGYTMDEALGSRRLFMLDYHDI  412
                             IR L  FPP S LD          S IT   L     G T DEA    RLF LD HD 

1byt.pdb              412  IMPYLRRINAT-STKAYATRTILFLKNDGTLRPLAIELSLPHPQGDQS-GA--FSQVFLP  467
1yge.pdb              413  FMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPH---SAGDLSAAVSQVVLP  469
                            MPY R IN   S K YATRTILFL  DGTL P AIELSLPH            SQV LP

1byt.pdb              468  ADEGVESSIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLH  527
1yge.pdb              470  AKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLT  529
                           A EGVES IWLLAKAYV VNDSCYHQL SHWLNTHA  EPF IAT RHLSV HPIYKLL 

1byt.pdb              528  PHYRDTMNINGLARLSLVNDGGVIEQTFLWGRYSVEMSAVVYKDWVFTDQALPADLIKRG  587
1yge.pdb              530  PHYRNNMNINALARQSLINANGIIETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRG  589
                           PHYR  MNIN LAR SL N  G IE TFL   YSVEMS  VYK WVFTDQALPADLIKRG

1byt.pdb              588  MAIEDPSCPHGIRLVIEDYPYTVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACW  647
1yge.pdb              590  VAIKDPSTPHGVRLLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWW  649
                            AI DPS PHG RL IEDYPY  DGLEIW AIKTWV EYV LYY  DD    D ELQ  W

1byt.pdb              648  KELVEVGHGDKKNEPWWPKMQTREELVEACAIIIWTASALHAAVNFGQYPYGGLILNRPT  707
1yge.pdb              650  KEAVEKGHGDLKDKPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPT  709
                           KE VE GHGD K  PWWPK QT E LVE C IIIW ASALHAAVNFGQYPYGGLI NRPT

1byt.pdb              708  LSRRFMPEKGSAEYEELRKNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEVYLGERDN  767
1yge.pdb              710  ASRRLLPEKGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDN  769
                            SRR  PEKG  EYEE   N  KAYL TIT K  TLI LSVIEILS HASDEVYLG RDN

1byt.pdb              768  PNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKEGLTF  827
1yge.pdb              770  PHWTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLT  829
                           P WTSD  AL AF  FGNKL  IE KL  RNND  L             LL  S E    

1byt.pdb              828  RGIPNSISI-  836
1yge.pdb              830  FRGIPNSISI  839
                                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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