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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:05:49 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/lta.html
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#====================================
# Aligned_structures: 3
#   1: 1ltsa.pdb
#   2: 1tiia.pdb
#   3: 1xtca.pdb
#
# Length:        193
# Identity:      105/193 ( 54.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    168/193 ( 87.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           10/193 (  5.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ltsa.pdb               1  ---RLYRADSRPPDEIKRSGGLMPRGHNEYFDRGTQ-MNINLYDHARGTQTGFVRYDDGY   56
1tiia.pdb               1  --NDYFRADSRTPDEVRRSGGLIPRGQDEAY-ERGTPININLYDHARGT-TGNTRYNDGY   56
1xtca.pdb               1  NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQ-MNINLYDHARGTQTGFVRHDDGY   59
                               lyRADSRpPDEikrSGGLmPRGq Eyf rgtq mNINLYDHARGT TGfvRydDGY

1ltsa.pdb              57  VSTSLSLRSAHLAGQSILSGYSTYYIYVIATAPNMFNVNDVLGVYSPHPYEQEVSALGGI  116
1tiia.pdb              57  VSTTTTLRQAHLLGQNMLGGYNEYYIYVVAAAPNLFDVNGVLGRYSPYPSENEYAALGGI  116
1xtca.pdb              60  VSTSISLRSAHLVGQTILSGHSTYYLYVLATAPNMFNVNDVLGAYSPHPDEQEVSALGGI  119
                           VSTs sLRsAHL GQ iLsGystYYiYV AtAPNmFnVNdVLG YSPhP EqEvsALGGI

1ltsa.pdb             117  PYSQIYGWYRVNFGVIDERLHRNREYRDRYYRNLNIAPAEDGYRLAGFPPDHQAWREEPW  176
1tiia.pdb             117  PLSQIIGWYRVSFGAIEGGMHRNRDYRRDLFRGLSAAPNEDGYRIAGFPDGFPAWEEVPW  176
1xtca.pdb             120  PYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPW  179
                           PySQIyGWYRV FGvide lHRNR YRdryyrnL iAPaeDGYrlAGFPp h AWrEePW

1ltsa.pdb             177  IHHAPQGCG----  185
1tiia.pdb             177  REFAPNSCLP---  186
1xtca.pdb             180  IHHAPPGCGNAPR  192
                           ihhAP gCg    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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