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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:06:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ltb.html
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#====================================
# Aligned_structures: 3
#   1: 1lt5d.pdb
#   2: 1tiid.pdb
#   3: 3chbd.pdb
#
# Length:        107
# Identity:       10/107 (  9.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     80/107 ( 74.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           13/107 ( 12.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1lt5d.pdb               1  APQ----TITELCSEYRNTQIYTINDKILSYTESMAGKREMVIITFKSGETFQVEVPGSQ   56
1tiid.pdb               1  ---GASQFFKDNCNRTTASL-VE-GVELTKYISDINNNTDGMYVVSSTGGVWRISRA---   52
3chbd.pdb               1  TPQ----NITDLCAEYHNTQIHTLNDKIFSYTESLAGKREMAIITFKNGATFQVEVPGSQ   56
                                   itdlC ey ntq  t ndki sYtes agkrem iitfk G tfqvevp   

1lt5d.pdb              57  HIDSQKKAIERMKDTLRITYLTETKIDKLCVWNNKTPNSIAAISMKN  103
1tiid.pdb              53  KDYPDNVMTAEMRKIAMAAVLS-GMRVNMCASPASSPNVIWAIELEA   98
3chbd.pdb              57  HIDSQKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPRAIAAISMAN  103
                           hidsqkkaierMkdtlriayLt  k  klCvwnnktPn IaAIsm n


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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