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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 10:57:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/lyase_1.html
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#====================================
# Aligned_structures: 5
#   1: 1aosa.pdb
#   2: 1dcna.pdb
#   3: 1fura.pdb
#   4: 1jswa.pdb
#   5: 1yfm.pdb
#
# Length:        531
# Identity:       23/531 (  4.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     55/531 ( 10.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          179/531 ( 33.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aosa.pdb               1  ---------------------------------IMEKFNAS--IA----YDRHLWEVDVQ   21
1dcna.pdb               1  --------------------------------------------------DQRLSEVDIQ   10
1fura.pdb               1  ----VRSEKDSMGAIDVPADKLWGAQTQRSLEH---FRIST--EKM----PTSLIHALAL   47
1jswa.pdb               1  MSNNIRIEEDLLGTREVPADAYYGVHTLRAIEN---FYISN--NKISDI--PEFVRGMVM   53
1yfm.pdb                1  ---SFRTETDAFGEIHVPADKYWGAQTQRSFQN---FKIGGARERM----PLPLVHAFGV   50
                                                                                l      

1aosa.pdb              22  GSKAYSRGLEKAGLLTKAEMDQILHGLDKV-----------K-LNSN-DE----DIHTAN   64
1dcna.pdb              11  GSMAYAKALEKAGILTKTELAKILSGLEKISEEWS-KG-V-FVVKGS-DE----DIHTAN   62
1fura.pdb              48  TKRAAAKVNEDLGLLSEEKASAIRQAADEVL-A-GQHDDEFP-LAIWQ-TGSGTQSNMNM  103
1jswa.pdb              54  VKKAAAMANKELQTIPKSVANAIIAACDEVL-NNGKCMDQFP-VDVYQ-GGAGTSVNMNT  110
1yfm.pdb               51  LKKSAAIVNESLGGLDPKISKAIQQAADEVA-S-GKLDDHFP-LVVFQ-TGSGTQSNMNA  106
                              a a   e  g l       I    d v                              

1aosa.pdb              65  ERRLKELIG-------------ATAGKLHTGRS--------RNDQVVTDLRLWMRQTCST  103
1dcna.pdb              63  ERRLKELIG-------------DIAGKLNTGRS--------RNDQVVTDLKLFMKNSLSI  101
1fura.pdb             104  NEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAA-------LLALRKQ  156
1jswa.pdb             111  NEVLANIGLELMGHQKGEYQYLNPNDHVNKCQS--------TNDAYPTGFRIAVYSSLIK  162
1yfm.pdb              107  NEVISNRAIEI----------VHPNNHCNQSQSSNDTFPTVMHIAA-------SLQIQNE  149
                              l                        n   S                           

1aosa.pdb             104  LSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALTRDSERLLEVR  163
1dcna.pdb             102  ISTHLLQLIKTLVERAAIEIDVILPGYTNLQKAQPIRWSQFLLSHAVALTRDSERLGEVK  161
1fura.pdb             157  LIPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSL  216
1jswa.pdb             163  LVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTA  222
1yfm.pdb              150  LIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSL  209
                           l   l  L            d    G T LQ A P    q        l           

1aosa.pdb             164  KRINVLPLGSGAIA-GNP--------LGVDRELLRAELNF-GAITLNSMDATSERDFVAE  213
1dcna.pdb             162  KRINVLPLGSGALA-GNP--------LDIDREMLRSELEF-ASISLNSMDAISERDFVVE  211
1fura.pdb             217  PHVAELALGGTAVGTGLNTHPEYARR---VADELAVITCAPFVTAPNKFEALATCDALVQ  273
1jswa.pdb             223  ELLLEVNLGATAIGTGLNTPKEYSPL---AVKKLAEVTGFPCVPAEDLIEATSDCGAYVM  279
1yfm.pdb              210  KTLSFLAQGGTAVGTGLNTKPGFDVK---IAEQISKETGLKFQTAPNRFEALAAHDAIVE  266
                                l lG  A   G                 l            n   A    d  v 

1aosa.pdb             214  FLFWRSLCMTHLSRMAEDLILYCTK---EFSFVQLSDAYSTGSSLMPQKKNPDSLELIRS  270
1dcna.pdb             212  FLSFATLLMIHLSKMAEDLIIYSTS---EFGFLTLSDAFST---------NPDSLELIRS  259
1fura.pdb             274  AHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPEN-EPGSSIMPGKVNPTQCEALTM  332
1jswa.pdb             280  VHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPEL-QAGSSIMPAKVNPVVPEVVNQ  338
1yfm.pdb              267  CSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPEN-EPGSSIMPGKVNPTQNEALTQ  325
                                  l   l k a D                l               NP   E    

1aosa.pdb             271  KAGRVFGRCAGLLMTLKGLPSTYNKDLQEDKEAVFEVSDTMSAVLQVATG-VISTLQIHQ  329
1dcna.pdb             260  KSGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVDTLTAVLQVATG-VISTLQISK  318
1fura.pdb             333  LCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNR  392
1jswa.pdb             339  VCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANK  398
1yfm.pdb              326  VCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANE  385
                               V G      m         N                                    

1aosa.pdb             330  ENMGQALS--PDMLATDLAYYLVRKGMPFRQAHEASGKAVFMAETKGVALNQLSLQELQT  387
1dcna.pdb             319  ENMEKALT--PEMLATDLALYLVRKGVPFRQAHTASGKAVHLAETKGITINNLSLEDLKS  376
1fura.pdb             393  ERINQLLNES-LMLVTALNTHI---------GYDKAAEIAKKAHKEGLTLKAAA--LALG  440
1jswa.pdb             399  EVCEGYVYNS-IGIVTYLNPFI---------GHHNGDIVGKICAETGKSVREVV--LERG  446
1yfm.pdb              386  PRIHELLTKS-LMLVTALNPKI---------GYDAASKVAKNAHKKGITLKESA--LELG  433
                           e     l     ml T L                        a   G             

1aosa.pdb             388  ---ISPLFSGDVICVWDYRHSVEQYGALGGTARSSVDWQIRQVRALLQAQ-  434
1dcna.pdb             377  ---ISPQFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQK  424
1fura.pdb             441  YLS-----EAEFDSWVRPEQM------------------------------  456
1jswa.pdb             447  LLT-----EAELDDIFSV---------------------------------  459
1yfm.pdb              434  VLT-----EKEFDEWVVPEHML-----------------------------  450
                                                                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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