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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:24:22 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/mle.html
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#====================================
# Aligned_structures: 3
#   1: 1muca.pdb
#   2: 2chr.pdb
#   3: 2mnr.pdb
#
# Length:        385
# Identity:       46/385 ( 11.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    192/385 ( 49.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           51/385 ( 13.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1muca.pdb               1  -ALIERIDAIIVDLPTIRQ----------QQTLVVLRVRCSDGVEGIGEATTIGGLAYG-   48
2chr.pdb                1  -MKIDAIEAVIVDVPTKR-PIQMSITTV-HQQSYVIVRVYSEGLVGVGEGGSVGGPVWS-   56
2mnr.pdb                1  EVLITGLRTRAVNVPLAY-PVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPV-ALK   58
                             lI  i a iVdvPt r            q lvvi    S GvvG ge    gg     

1muca.pdb              49  YESPEGIKANIDAHLAPALIGLAADNINAAMLKLDKLAK-------GNTFAKSGIESALL  101
2chr.pdb               57  AECAETIKIIVERYLAPHLLGTDAFNVSGALQTMARAVT-------GNASAKAAVEMALL  109
2mnr.pdb               59  --SLKQLL----DDMAAMIVNEPL-APVSLEAMLAKRFCLAGYTGL-IRMAAAGIDMAAW  110
                             s e ik      lAp l g  a n   a   lak           n  AkagiemAll

1muca.pdb             102  DAQGKRLGLPVSELLGGRVRDSLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGAN  161
2chr.pdb              110  DLKARALGVSIAELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFR  169
2mnr.pdb              111  DALGKVHETPLVKLLGANAR-PVQAYDSHSLDGVKLATERAVTAAELG-FRAVKTKIGYP  168
                           Da gk lg p  eLLGg  R     awtlasgdtkrd   Av m E r hr fK KiG  

1muca.pdb             162  PVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGIDLIEQPISRINRG  221
2chr.pdb              170  SPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELIEQPVGRENTQ  229
2mnr.pdb              169  ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIEEPTLQHDYE  228
                              qDL hv  i   lGd a  rVDvNQ wDe  Ai   q L   Gv lIEqP  r n  

1muca.pdb             222  GQVRLNQRTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEAA  281
2chr.pdb              230  ALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEAS  289
2mnr.pdb              229  GHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQF  288
                           g  Rl     vpimadEs    e aF la dga   f lk  k GGv a  r aa Aea 

1muca.pdb             282  GIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFG-PL-LL--TEEIVNEPPQYRDFQ  337
2chr.pdb              290  GIASYGGTMLDSTIGTSVALQLYSTVPSLPFGCELIG-PF-VL--ADTLSHEPLEIRDYE  345
2mnr.pdb              289  GIPMSSHL------FQEISAHLLAATPTAH-WLERLDLAGSVIEP-------TLTFEGGN  334
                           GI  yggt      gt  sahl  t p l  g El g p  vl         pl  rd  

1muca.pdb             338  LHIPRTPGLGLTLDEQRLARFAR--  360
2chr.pdb              346  LQVPTGVGHGMTLDEDKVRQYARVS  370
2mnr.pdb              335  AVIPDLPGVGIIWREKEIGKYLV--  357
                           l iP  pG G tldE     yar  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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