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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:22:23 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/mmoa.html
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#====================================
# Aligned_structures: 2
#   1: 1mhyd.pdb
#   2: 1mtyd.pdb
#
# Length:        512
# Identity:      416/512 ( 81.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    416/512 ( 81.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            2/512 (  0.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1mhyd.pdb               1  --NRAPVGVEPQEVHKWLQSFNWDFKENRTKYPTKYHMANETKEQFKVIAKEYARMEAAK   58
1mtyd.pdb               1  AANRAPTSVNAQEVHRWLQSFNWDFKNNRTKYATKYKMANETKEQFKLIAKEYARMEAVK   60
                             NRAP  V  QEVH WLQSFNWDFK NRTKY TKY MANETKEQFK IAKEYARMEA K

1mhyd.pdb              59  DERQFGTLLDGLTRLGAGNKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATAAEQK  118
1mtyd.pdb              61  DERQFGSLQVALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAAEQK  120
                           DERQFG L   LTRL AG  VHP W ETMKV SNFLEVGEYNAIAA  MLWDSA AAEQK

1mhyd.pdb             119  NGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAGHNDARRTRAIGPLWKGMKRVFADGFIS  178
1mtyd.pdb             121  NGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRTRTIGPLWKGMKRVFSDGFIS  180
                           NGYLAQVLDEIRHTHQCA  N Y  K   DPAGHNDARRTR IGPLWKGMKRVF DGFIS

1mhyd.pdb             179  GDAVECSVNLQLVGEACFTNPLIVAVTEWASANGDEITPTVFLSVETDELRHMANGYQTV  238
1mtyd.pdb             181  GDAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTV  240
                           GDAVECS NLQLVGEACFTNPLIVAVTEWA ANGDEITPTVFLS ETDELRHMANGYQTV

1mhyd.pdb             239  VSIANDPASAKFLNTDLNNAFWTQQKYFTPVLGYLFEYGSKFKVEPWVKTWNRWVSEDWG  298
1mtyd.pdb             241  VSIANDPASAKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKVEPWVKTWDRWVYEDWG  300
                           VSIANDPASAK LNTDLNNAFWTQQKYFTPVLG LFEYGSKFKVEPWVKTW RWV EDWG

1mhyd.pdb             299  GIWIGRLGKYGVESPRSLRDAKRDAYWAHHDLALAAYAMWPLGFARLALPDEEDQAWFEA  358
1mtyd.pdb             301  GIWIGRLGKYGVESPRSLKDAKQDAYWAHHDLYLLAYALWPTGFFRLALPDQEEMEWFEA  360
                           GIWIGRLGKYGVESPRSL DAK DAYWAHHDL L AYA WP GF RLALPD E   WFEA

1mhyd.pdb             359  NYPGWADHYGKIFNEWKKLGYEDPKSGFIPYQWLLANGHDVYIDRVSQVPFIPSLAKGTG  418
1mtyd.pdb             361  NYPGWYDHYGKIYEEWRARGCEDPSSGFIPLMWFIENNHPIYIDRVSQVPFCPSLAKGAS  420
                           NYPGW DHYGKI  EW   G EDP SGFIP  W   N H  YIDRVSQVPF PSLAKG  

1mhyd.pdb             419  SLRVHEFNGKKHSLTDDWGERQWLIEPERYECHNVFEQYEGRELSEVIAEGHGVRSDGKT  478
1mtyd.pdb             421  TLRVHEYNGEMHTFSDQWGERMWLAEPERYECQNIFEQYEGRELSEVIAELHGLRSDGKT  480
                            LRVHE NG  H   D WGER WL EPERYEC N FEQYEGRELSEVIAE HG RSDGKT

1mhyd.pdb             479  LIAQPHTRGDNLWTLEDIKRAGCVFPDPLAKF  510
1mtyd.pdb             481  LIAQPHVRGDKLWTLDDIKRLNCVFKNPVKAF  512
                           LIAQPH RGD LWTL DIKR  CVF  P   F


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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