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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:31:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/mutT.html
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#====================================
# Aligned_structures: 2
#   1: 1f3ya.pdb
#   2: 1tum.pdb
#
# Length:        177
# Identity:       26/177 ( 14.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     26/177 ( 14.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           60/177 ( 33.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f3ya.pdb               1  GPLGSMDSPPE-GYRRNVGICLMNNDKKIFAASRLD-I--PDAWQMPQGGIDEG--EDPR   54
1tum.pdb                1  -----------MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIE--MGETPE   47
                                                  N    IF   R            P G I     E P 

1f3ya.pdb              55  NAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDW-KGQAQKWFLFKFT  113
1tum.pdb               48  QAVVRELQEEVGITPQHFSL--FEKLEYEFP---------------DRHITLWFWLVER-   89
                            A  REL EE G T           L Y FP                        L    

1f3ya.pdb             114  GQDQEINLLGDGSEKPE--F-GEWSWVTP-EQ-LIDLTVEFKKPVYKEVLSVFAPHL  165
1tum.pdb               90  ----------WEGEP-WGKEGQPGEWMSLVG-LNADDFPPAN----EPVIAKLKRL-  129
                                        E           W         D            V        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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