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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 11:33:01 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/oxidored_q6.html
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#====================================
# Aligned_structures: 5
#   1: 1cc1s.pdb
#   2: 1e3da.pdb
#   3: 1frfs.pdb
#   4: 1h2rs.pdb
#   5: 2frva.pdb
#
# Length:        286
# Identity:       66/286 ( 23.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    155/286 ( 54.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           35/286 ( 12.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cc1s.pdb               1  ----KKAPVIWVQGQGCTGCSVSLLNAVHPRIKEILLDVISLEFHPTVMASEGEMALAHM   56
1e3da.pdb               1  ----SRPSVVYLHAAECTGCSEALLRTYQPFIDTLILDTISLDYHETIMAAAGEAAEEAL   56
1frfs.pdb               1  ---KHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGETSEAAL   57
1h2rs.pdb               1  LMGPRRPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAAL   60
2frva.pdb               1  ---KKRPSVVYLHNAECTGCSESVLRTVDPYVDELILDVISMDYHETLMAGAGHAVEEAL   57
                                rpsVv lh aeCTGCse  lr   P id liLD iSldyheT MA aG   e al

1cc1s.pdb              57  YEIAEKFNG-NFFLLVEGAIPTAKEGRYCIVGEAKAHHHEVTMMELIRDLAPKSLATVAV  115
1e3da.pdb              57  QAAVNG--PDGFICLVEGAIPTGMDNKYGYIA-------GHTMYDICKNILPKAKAVVSI  107
1frfs.pdb              58  HEALEG--KDGYYLVVEGGLPTIDGGQWGMVA-------GHPMIETCKKAAAKAKGIICI  108
1h2rs.pdb              61  EQAVNS--PHGFIAVVEGGIPTAANGIYGKVA-------NHTMLDICSRILPKAQAVIAY  111
2frva.pdb              58  HEAIKG----DFVCVIEGGIPMGDGGYWGKVG-------GRNMYDICAEVAPKAKAVIAI  106
                             a        f   vEG iPt   g  g v           M   c    pKa a    

1cc1s.pdb             116  GTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVL  175
1e3da.pdb             108  GTCACYGGIQAAKPNPTAAKGINDCYAD--LGVKAINVPGCPPNPLNMVGTLVAFLKG--  163
1frfs.pdb             109  GTCSPYGGVQKAKPNPSQAKGVSEALG-----VKTINIPGCPPNPINFVGAVVHVLTK--  161
1h2rs.pdb             112  GTCATFGGVQAAKPNPTGAKGVNDALKH--LGVKAINIAGCPPNPYNLVGTIVYYLKNK-  168
2frva.pdb             107  GTCATYGGVQAAKPNPTGTVGVNEALGK--LGVKAINIAGCPPNPMNFVGTVVHLLTK--  162
                           GTC  yGG qaAkpNpt  kgv          vk iN  GCPPnP n VGt V  l    

1cc1s.pdb             176  NPTEHPLPELDDDGRPLLFFGDNIHENCPYLDKYDNSEFAETFTK-P----GCKAELGCK  230
1e3da.pdb             164  -----QKIELDEVGRPVMFFGQSVHDLCERRKHFDAGEFAPSFNSEEARKGWCLYDVGCK  218
1frfs.pdb             162  -----GIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCK  216
1h2rs.pdb             169  -----AAPELDSLNRPTMFFGQTVHEQCPRLPHFDAGEFAPSFESEEARKGWCLYELGCK  223
2frva.pdb             163  -----GMPELDKQGRPVMFFGETVHDNCPRLKHFEAGEFATSFGSPEAKKGYCLYELGCK  217
                                  peLD  gRP  FfG  vH  Cprl hf a EFA sF s e     ClyelGCK

1cc1s.pdb             231  GPSTYADCAKRRWNNGINWCV-ENAVCIGCVEPDFPDGKSPFYVAE  275
1e3da.pdb             219  GPETYNNCPKVLFNETNW-PVAAGHPCIGCSEPNFWDDMTPFYQN-  262
1frfs.pdb             217  GPVTYNNCPKVLFNQVNW-PVQAGHPCLGCSEPDFWDTMTPFYEQG  261
1h2rs.pdb             224  GPVTMNNCPKIKFNQTNW-PVDAGHPCIGCSEPDFWDAMTPFYQN-  267
2frva.pdb             218  GPDTYNNCPKQLFNQVNW-PVQAGHPCIACSEPNFWDLYSPFYSA-  261
                           GP TynnCpK  fN  nw pV aghpCigCsEP FwD   PFY   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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