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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 11:35:44 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/p450.html
################################################################################################
#====================================
# Aligned_structures: 5
#   1: 1cpt.pdb
#   2: 1oxa.pdb
#   3: 1rom.pdb
#   4: 2cpp.pdb
#   5: 2hpda.pdb
#
# Length:        534
# Identity:       15/534 (  2.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     47/534 (  8.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          184/534 ( 34.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cpt.pdb                1  M-----DA----RATIPEH---I-ARTV-----ILP-QGY----A-DDEVI-YPAFKWLR   35
1oxa.pdb                1  ------------------------A---TVPDLE-S-DSF-----HV--DW-YSTYAELR   23
1rom.pdb                1  -----------------------------APSFP-F-S--RASGPEP---P--AEFAKLR   22
2cpp.pdb                1  -NLAPLPP----HVPE--H---L-V---FDFDMY-NPSNL----SA---GV-QEAWAVLQ   37
2hpda.pdb               1  --------TIKEMPQPKTFGELKNLPLL-----NTD-------------KPVQALMKIAD   34
                                                                                     l 

1cpt.pdb               36  D--EQPLAMAHIEGYDPMWIATKHADVMQIGKQPGLFSNAE--------GSEILYDQNNE   85
1oxa.pdb               24  E--TAPVTPVRFL-GQDAWLVTGYDEAKAALSDLRL-SSDPKKKYPGVEV--E-F-PAYL   75
1rom.pdb               23  A--TNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKL-SKVRTR---QGFP--ELS-ASGK   73
2cpp.pdb               38  ESNVPDLVWTRCN--GGHWIATRGQLIREAYEDYRHFSSEC--------P--FIP-REAG   84
2hpda.pdb              35  E--LGEIFKFEAPG-RVTRYLSSQRLIKEACDE-SRFDKN--------------L-SQAL   75
                                             w  t               s                      

1cpt.pdb               86  AFMRSISGGCPHVI--DSLTSMD-P-PTHTAYRGLTLNWFQPASIRKLEENIRRIAQASV  141
1oxa.pdb               76  GFPED-V----RNYFATNMGTSD-P-PTHTRLRKLVSQEFTVRRVEAMRPRVEQITAELL  128
1rom.pdb               74  QA----A----KAK--PTFVDMD-P-PEHMHQRSMVEPTFTPEAVKNLQPYIQRTVDDLL  121
2cpp.pdb               85  EA----Y------D--FIPTSMD-P-PEQRQFRALANQVVGMPVVDKLENRIQELACSLI  130
2hpda.pdb              76  KFVRDFA------G--DGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLV  127
                                                 d p p     r      f                  l 

1cpt.pdb              142  QRLLDFD-G--ECDFM-TDCALYYPLHVVMTALG-VPEDDE-------PLMLKLTQD-FF  188
1oxa.pdb              129  DEVG-DS-G--VVDIV-DRFAHPLPIKVICELLG-VDEAAR-------GAFGRWSSEILV  175
1rom.pdb              122  EQMKQKGCANGPVDLV-KEFALPVPSYIIYTLLG-VPFNDL-------EYLTQQNAIRTN  172
2cpp.pdb              131  ESLR-PQ-G--QCNFT-EDYAEPFPIRIFMLLAG-LPEEDI-------PHLKYLTDQMTR  177
2hpda.pdb             128  QKWERLN-A--DEHIEVPEDMTRLTLDTIGLCGFNYRFN--SFYRDQPHPFITSMVRALD  182
                                               a   p        g                          

1cpt.pdb              189  ---------------GV-E-AARRFHETIATFYDYFNGFTVDRRSCPKD--DVMSLLANS  229
1oxa.pdb              176  M---------------DPE-RAEQRGQAAREVVNFILDLVERRRTEPGD--DLLSALISV  217
1rom.pdb              173  ----------------G-SSTAREASAANQELLDYLAILVEQRLVEPKD--DIISKLCTE  213
2cpp.pdb              178  P---------------DGS-M-TF-AEAKEALYDYLIPIIEQRRQKPGT--DAISIVANG  217
2hpda.pdb             183  EAMNKLQRANPDDPAYD-E-NKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNG  240
                                                            d        R   p    D  s     

1cpt.pdb              230  KLD--G---NYIDDKYINAYYVAIATAGHDTTSSSSGGAIIGLSRNPEQLALAKSDP---  281
1oxa.pdb              218  QDDD-D---GRLSADELTSIALVLLLAGFEASVSLIGIGTYLLLTHPDQLALVRADP---  270
1rom.pdb              214  Q-----VKPGNIDKSDAVQIAFLLLVAGNATMVNMIALGVATLAQHPDQLAQLKANP---  265
2cpp.pdb              218  QVN--G---RPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELIERP---  269
2hpda.pdb             241  KDPETG---EPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEE-AAR  296
                                                   l aG  t           L   P  l          

1cpt.pdb              282  --------------A-LIPRLVDEAVRWTAPVKSF-MRTALADTEVR-GQNIKRGDRIML  324
1oxa.pdb              271  --------------S-ALPNAVEEILRYIAPPETT-TRFAAEEVEIG-GVAIPQYSTVLV  313
1rom.pdb              266  --------------S-LAPQFVEELCRYHTASALAIKRTAKEDVMIG-DKLVRANEGIIA  309
2cpp.pdb              270  --------------E-RIPAACEELLRRFSLV-AD-GRILTSDYEFH-GVQLKKGDQILL  311
2hpda.pdb             297  VLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAF-SLYAKEDTVLGGEYPLEKGDELMV  355
                                             p    E  R          r a  d                 

1cpt.pdb              325  SYPSANRDEEVFS-NPDEFDITR-----F--P--NRHLGFGWGAHMCLGQHLAKLEMKIF  374
1oxa.pdb              314  ANGAANRDPSQFP-DPHRFDVTR-----D--T--RGHLSFGQGIHFCMGRPLAKLEGEVA  363
1rom.pdb              310  SNQSANRDEEVFE-NPDEFNMNR-----K--WPPQDPLGFGFGDHRCIAEHLAKAELTTV  361
2cpp.pdb              312  PQMLSGLDERENA-CPMHVDFSR-----Q--K--VSHTTFGHGSHLCLGQHLARREIIVT  361
2hpda.pdb             356  LIPQLHRDKTIWGDDVEEFRPERFENPSAIPQ--HAFKPFGNGQRACIGQQFALHEATLV  413
                                 rD       p  f   R                FG G h C g  lA  E    

1cpt.pdb              375  FEELLPKLKSVELSGP---PRL-VATNFVGGPKNVPIRFTK--A----------  412
1oxa.pdb              364  LRALFGRFPALSLGIDADDVVWRRS-LLLRGIDHLPVRLD-------------G  403
1rom.pdb              362  FSTLYQKFPDLKVAVPLGKINYTPL-NRDVGIVDLPVIF---------------  399
2cpp.pdb              362  LKEWLTRIPDFSIAPGA-QIQH-KS-GIVSGVQALPLVWDP--A----TTKAV-  405
2hpda.pdb             414  LGMMLKHFDF-EDHTNY-ELDI-KE-TLTLKPEGFVVKAKSKKIPLGG------  457
                                                         g    p                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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