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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 17:35:44 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/parv.html
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#====================================
# Aligned_structures: 7
#   1: 1a75a.pdb
#   2: 1omd.pdb
#   3: 1pal.pdb
#   4: 1pvaa.pdb
#   5: 1rtp1.pdb
#   6: 5cpv.pdb
#   7: 5pal.pdb
#
# Length:        114
# Identity:       29/114 ( 25.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     43/114 ( 37.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           11/114 (  9.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a75a.pdb               1  ----AG--ILA-DADCAAAVKACEAADSFSYKAFFAKCGLSGKSADDIKKAFVFIDQDKS   53
1omd.pdb                1  -ITD-----ILSAEDIAAALQECQDPDTFEPQKFFQTSGLSKMSASQVKDIFRFIDNDQS   54
1pal.pdb                1  ------SFAGLKDADVAAALAACSAADSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKS   54
1pvaa.pdb               1  AAKD-----LLKADDIKKALDAVKAEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADAS   55
1rtp1.pdb               1  SMTD-----LLSAEDIKKAIGAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKS   55
5cpv.pdb                1  AFAG-----VLNDADIAAALEACKAADSFNHKAFFAKVGLTSKSADDVKKAFAIIDQDKS   55
5pal.pdb                1  PMTK-----VLKADDINKAISAFKDPGTFDYKRFFHLVGLKGKTDAQVKEVFEILDKDQS   55
                                     l   D   A  a      F  k FF   GL   s   vK  F   D D S

1a75a.pdb              54  GFIEEDELKLFLQVFKAGARALTDAETKAFLKAGDSDGDGAIGVEEWVALVKA-  106
1omd.pdb               55  GYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEMVHS-  107
1pal.pdb               55  GFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIKA-  107
1pvaa.pdb              56  GFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVHEA  109
1rtp1.pdb              56  GFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVAES  109
5cpv.pdb               56  GFIEEDELKLFLQNFKADARALTDGETKTFLKAGDSDGDGKIGVDEFTALVKA-  108
5pal.pdb               56  GFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVAQA  109
                           Gfiee ELk  L  F    R L   ETK    a D DgDG IG  Ef   v   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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