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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 08:30:19 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/pdc.html
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#====================================
# Aligned_structures: 4
#   1: 1bfd.pdb
#   2: 1poxa.pdb
#   3: 1pvda.pdb
#   4: 1zpda.pdb
#
# Length:        647
# Identity:       20/647 (  3.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     96/647 ( 14.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          187/647 ( 28.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bfd.pdb                1  --ASVHGTTYELLRRQGIDTVFGNPGSNELPFLKD--FP-EDFRYILALQEACVVGIADG   55
1poxa.pdb               1  TNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAA   60
1pvda.pdb               1  SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEV-EGMRWAGNANELNAAYAADG   59
1zpda.pdb               1  -SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLN-KNMEQVYCCNELNCGFSAEG   58
                                g    e L   g    fg pG   l  ld                E      A g

1bfd.pdb               56  YAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT----N  111
1poxa.pdb              61  DAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQE-----  115
1pvda.pdb              60  YARIK-GMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSIS----------HHTL  108
1zpda.pdb              59  YARAK-GAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHV--LHHAL  115
                           yA               G   a      a   h pv    G                   

1bfd.pdb              112  ----V-DAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDA  166
1poxa.pdb             116  ----M-NENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAH-QGVAVVQIPVDLPWQQI  169
1pvda.pdb             109  GNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVT-QRPVYLGLPANLVDLNV  167
1zpda.pdb             116  GKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALRE-KKPVYLEIACNIASMPC  174
                                                    a  P  id  I  a    q pvyl  p        

1bfd.pdb              167  DPQ-S--HHLFDRH-VS-SS-VRL----NDQDLDILVKALNSASNPAIVLGPDVDAANAN  216
1poxa.pdb             170  SAE-DWYASANNY--QTPLL-PEP----DVQAVTRLTQTLLAAERPLIYYGIGAR--KAG  219
1pvda.pdb             168  PAK-L--LQ---TP-ID-MSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVK  219
1zpda.pdb             175  AAPGP--AS-----ALF-ND-EASDEASLNAAVDETLKFIANRDKVAVLVGSKLRAAGAE  225
                            a                               d        a  p i  g       a 

1bfd.pdb              217  ADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMP---AGIAAISQLLEGHDVVLVIG  273
1poxa.pdb             220  KELEQLSKTLKIPLMSTYPA-KGIVADRYPAYLGSAN-RVA-QKPANEALAQADVVLFVG  276
1pvda.pdb             220  AETKKLIDLTQFPAFVTPMG-KGSISEQHPRYGGVYVGTLS-KPEVKEAVESADLILSVG  277
1zpda.pdb             226  EAAVKFTDALGGAVATMAAA-KSFFPEENALYIGTSWGEVS-YPGVEKTMKEADAVIALA  283
                                l   l  p      a k       p y G                  aD vl  g

1bfd.pdb              274  APVFRYHQYD-----------PG---QYLKPGTRLISVTCDPLEAAR--AP-MGDA-IVA  315
1poxa.pdb             277  NNYP---------FAEVSKAFKN---T-----RYFLQIDIDPAKLGK--RHKTDIA-VLA  316
1pvda.pdb             278  ALLS------DK--------------T-----KNIVEFHSDH-----MKI--RNATFPGV  305
1zpda.pdb             284  PVFN--------DYS--TTGWTDIPDP-----KKLVLAEPRS-----VVV--NGIRFPSV  321
                                                                   d                   

1bfd.pdb              316  DIGAMASALANLVEESSR---------QLPTAAP-EPAK---------------------  344
1poxa.pdb             317  DAQKTLAAILAQVSERES---------------------TPWWQANLANVKNWRAYLASL  355
1pvda.pdb             306  QMKFVLQKLLTNIA------DAAKGYKP-VAVPARTPAN---------------------  337
1zpda.pdb             322  HLKDYLTRLAQKVSKKTGSLDFFKSLN--AGE---LKKA---------------------  355
                                l  l   v                                               

1bfd.pdb              345  VDQD-AGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPG-SYYFCA-AGG  401
1poxa.pdb             356  EDKQ-EGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTP-SNRHITSNLFAT  413
1pvda.pdb             338  AAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQT-TFPN-NTYGISQVLWGS  395
1zpda.pdb             356  APADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRM-KLPN-GARVEYEMQWGH  413
                                  pL                     e g             n           g 

1bfd.pdb              402  LGFALPAAIGVQLAEP---E-RQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTY  457
1poxa.pdb             414  MGVGIPGAIAAKLNYP---E-RQVFNLAGDGGASMTMQDLVTQVQYHLPVINVVFTNCQY  469
1pvda.pdb             396  IGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGY  455
1zpda.pdb             414  IGWSVPAAFGYAVGAP---E-RRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGY  469
                            G   paa g     p   e r vi   GDGs   t q   t     lp i    nN  Y

1bfd.pdb              458  GALRWFAGVLEAEN--VPGLDVPGIDFRALAKGYG---------VQALKADNLEQLKGSL  506
1poxa.pdb             470  GFIKDEQEDTNQND--FIGVEFNDIDFSKIADGVH---------MQAFRVNKIEQLPDVF  518
1pvda.pdb             456  TIEKLIH----G--PKAQYNEIQGWDHLSLLPTFG-A-----KDYETHRVATTGEWDKLT  503
1zpda.pdb             470  TIEVMIH----D----GPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGGELAEAI  521
                                                    D   l                         l    

1bfd.pdb              507  QE--ALS--AKGPVLIEVSTV--------------------------  523
1poxa.pdb             519  EQ--AKAIAQHEPVLIDAVITGDRP-------------------L--  542
1pvda.pdb             504  QDKSFND--NSKIRMIEIMLPVFDAP---------------------  527
1zpda.pdb             522  KV--ALAN-TDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK  565
                               a       p lIe                              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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