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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 11:53:21 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/peroxidase.html
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#====================================
# Aligned_structures: 5
#   1: 1arp.pdb
#   2: 1lgaa.pdb
#   3: 1mn2.pdb
#   4: 1qpaa.pdb
#   5: 2cyp.pdb
#
# Length:        391
# Identity:       19/391 (  4.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     92/391 ( 23.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          125/391 ( 32.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1arp.pdb                1  SVTC-----PGGQSTSNS-QCCVWFDVLDDLQTNFYQGSKC--------ESPVRKILRIV   46
1lgaa.pdb               1  -ATC-----ANGKTVGDA-SCCAWFDVLDDIQANMFHGGQC--------GAEAHESIRLV   45
1mn2.pdb                1  -AVC-----PDGTRVSHA-ACCAFIPLAQDLQETIF-QNEC--------GQDAHEVIRLT   44
1qpaa.pdb               1  -VACP----DGVHTASNA-ACCAWFPVLDDIQQNLFHGGQC--------GAEAHEALRMV   46
2cyp.pdb                1  -----TPLVHVA-SVEKGRSYEDFQKVYNAIALKLR-----EDDEYDNYIGYGPVLVRLA   49
                                               cc    v  d q                         R  

1arp.pdb               47  FHDAIGFSPALTAAGQ-FGG-GGADGSIIAHSNIELAFPANGGLTDTIEALRAVGINHG-  103
1lgaa.pdb              46  FHDSIAISPAMEAKGK-FGG-GGADGSIMIFDTIETAFHPNIGLDEVVAMQKPFVQKHG-  102
1mn2.pdb               45  FHDAIAISRSQG----PKAG-GGADGSMLLFPTVEPNFSANNGIDDSVNNLIPFMQKHNT   99
1qpaa.pdb              47  FHDSIAISPKLQSQGK-FGG-GGADGSIITFSSIETTYHPNIGLDEVVAIQKPFIAKHG-  103
2cyp.pdb               50  WHTSGTWDKHDN----T---GGSYGGTYR-F-KKEFNDPSNAGLQNGFKFLEPIHKEFPW  100
                           fHd i  s             GgadGs   f   E     N Gl        p    h  

1arp.pdb              104  VSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSS--QPSPPSLIPGPGNTVTAILDRMGD  161
1lgaa.pdb             103  VTPGDFIAFAGAVALSNCPGAPQMNFFTGRKPAT--QPAPDGLVPEPFHTVDQIIARVND  160
1mn2.pdb              100  ISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKT--IAAVDGLIPEPQDSVTKILQRFED  157
1qpaa.pdb             104  VTPGDFIAFAGAVGVSNCPGAPQMQFFLGRPEAT--QAAPDGLVPEPFHTIDQVLARMLD  161
2cyp.pdb              101  ISSGDLFSLGGVTAVQEMQ-GPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQR  159
                              gD   fagav  sncp  P   f  GR           gl P p         r  d

1arp.pdb              162  AGFSPDEVVD-LLAAHSLASQEG-LNSAIFRSPLDSTPQVFDTQFYIETLLK-GTT-QPG  217
1lgaa.pdb             161  AGEFDELELVWMLSAHSVAAVND-VDPTVQGLPFDSTPGIFDSQFFVETQFR-GTL-FPG  217
1mn2.pdb              158  AGGFTPFEVVSLLASHSVARANK-VDQTIDAAPFDSTPFTFDTQVFLEVLLK-GVG-FPG  214
1qpaa.pdb             162  AGGFDEIETV-LLSAHSIAAAND-VDPTISGLPFDSTPGQFDSQFFVETQLR-GTA-FPG  217
2cyp.pdb              160  -LNMNDREVVALMGAHALGKTHLKNS-GY-EGPWGAANNVFTNEFYLNLLNEDWKLEKND  216
                            g     e v ll aHs a             P dstp  Fd qf  e     g    pg

1arp.pdb              218  PSLGFAEELSPFP-------GEFRMRSDALLARDSRTACRWQSMTSSNEVMGQRYRAAMA  270
1lgaa.pdb             218  SGGNQGEVESGMA-------GEIRIQTDHTLARDSRTACEWQSFVGNQSKLVDDFQFIFL  270
1mn2.pdb              215  SANNTGEVASPLPLGSGSDTGEMRLQSDFALAHDPRTACIWQGFVNEQAFMAASFRAAMS  274
1qpaa.pdb             218  KTGIQGTVMSPLK-------GEMRLQTDHLFARDSRTACEWQSFVNNQTKLQEDFQFIFT  270
2cyp.pdb              217  AN---NEQWDSKS-------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFE  266
                                 e  s          Ge r   D  la D rtac wq     q      f     

1arp.pdb              271  KMSVLGFDRNALTDCSDVIPSAVSNN--A-APVIPGGLTVDDIEVSCPSEPFPEIATASG  327
1lgaa.pdb             271  ALTQLGQDPNAMTDCSDVIPLSKPIPGNGPFSFFPPGKSHSDIEQACAETPFPSLVTLPG  330
1mn2.pdb              275  KLAVLGHNRNSLIDCSDVVPVPKPAT--GQPAMFPASTGPQDLELSCPSERFPTLTTQPG  332
1qpaa.pdb             271  ALSTLGHDMNAMIDCSEVIPAPKPVN--FGPSFFPAGKTHADIEQACASTPFPTLITAPG  328
2cyp.pdb              267  KLLENGITFP--------------KD--AP------------------SPFIFKTLE---  289
                            l  lG   n                                      s  fp   t   

1arp.pdb              328  PLPSLA--------PAP--------------  336
1lgaa.pdb             331  PATSVA--------RIPPHKA----------  343
1mn2.pdb              333  ASQSLIAHCPDGSMSCPGVQF--NGPA----  357
1qpaa.pdb             329  PSASVA--------RIPPPPSPN--------  343
2cyp.pdb              290  ---------------------------EQGL  293
                                                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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