################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 22:30:36 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/phosfruc.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1pfka.pdb # 2: 4pfk.pdb # # Length: 320 # Identity: 173/320 ( 54.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 173/320 ( 54.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 1/320 ( 0.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1pfka.pdb 1 MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSD 60 4pfk.pdb 1 -MKRIGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGD 59 K IGVLTSGGD PGMNAAIR VVR A G EV G Y GY GL L V D 1pfka.pdb 61 MINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPC 120 4pfk.pdb 60 IIHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFPC 119 I RGGT L AR PEF E IE LKK GI LVVIGGDGSY GA LTE GFPC 1pfka.pdb 121 IGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISVVEVMGRYCGDLTLA 180 4pfk.pdb 120 VGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTYVIEVMGRHAGDIALW 179 G PGTIDNDI GTD TIGF TAL TV AID RDT SH R V EVMGR GD L 1pfka.pdb 181 AAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHFIEKETG 240 4pfk.pdb 180 SGLAGGAETILIPEADYDMNDVIARLKRGHERGKKHSIIIVAEGVGSGVDFGRQIQEATG 239 AGG E PE D K G GKKH I E I TG 1pfka.pdb 241 RETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDA 300 4pfk.pdb 240 FETRVTVLGHVQRGGSPTAFDRVLASRLGARAVELLLEGKGGRCVGIQNNQLVDHDIAEA 299 ETR TVLGH QRGGSP DR LASR GA A LLL G GGRCVGIQN QLV HDI A 1pfka.pdb 301 IENMKRPFKGDWLDCAKKLY 320 4pfk.pdb 300 LANKHTIDQRMYALSKELSI 319 N #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################