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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:31:03 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/phosphotriesterase.html
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#====================================
# Aligned_structures: 2
#   1: 1bf6a.pdb
#   2: 1psca.pdb
#
# Length:        338
# Identity:       81/338 ( 24.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     81/338 ( 24.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           56/338 ( 16.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bf6a.pdb               1  --------SFDP--TGYTLAHEHLHID--LSGFKNNVDCRLD----QYAFICQEMNDLMT   44
1psca.pdb               1  DRINTVRGPITISEAGFTLTHEHICGSSAGFLRAW-PEFF-GSRKALAEKAVRGLRRARA   58
                                          G TL HEH                                     

1bf6a.pdb              45  RGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEM  104
1psca.pdb              59  AGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAATGLWF--DPPLSMRLRSVEELTQFF  116
                            GVR          GR       V R      VA TG       P     RSV EL Q  

1bf6a.pdb             105  VDEIEQGIDGTELKAGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFS-TM  163
1psca.pdb             117  LREIQYGIEDTGIRAGI-IKVA-TTGKATPFQELVLKAAARASLATGVPVTTHTAASQRD  174
                             EI  GI  T   AGI        GK TP  E V  AAA A   TG P  THT  S   

1bf6a.pdb             164  GLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNS---------  214
1psca.pdb             175  GEQQAAIFESEGLSPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIPHSAIGLEDNASA  234
                           G  Q A     G   SRV  GH D  D L         G     D I             

1bf6a.pdb             215  ----Y-YPDEKRIAMLHALRDRGLLNRVMLSMDITR------RSHLKANG------GYGY  257
1psca.pdb             235  SALLGIRSWQTRALLIKALIDQGYMKQILVSNDWLFGFSSYVTNIMD---VMDRVNPDGM  291
                                      R     AL D G       S D                         G 

1bf6a.pdb             258  DYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ----  291
1psca.pdb             292  AFIPLRVIPFLREKGVPQETLAGITVTNPARFLSPTLR  329
                                  IP LR  G  Q         NP  F      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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