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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:04:28 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/pilin.html
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#====================================
# Aligned_structures: 3
#   1: 1dzoa.pdb
#   2: 1hpwa.pdb
#   3: 2pil.pdb
#
# Length:        203
# Identity:        8/203 (  3.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     33/203 ( 16.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          120/203 ( 59.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dzoa.pdb               1  ---------GT--------------------------EFARSEGASALASVNPLKTTVEE   25
1hpwa.pdb               1  ALEGTEFAR---------------------AQLSEAMTLASGLKTKVSDIFSQD------   33
2pil.pdb                1  -----------FTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTE   49
                                                                  Ar     a             

1dzoa.pdb              26  ALSRG-WSVKSGTGTEDATKKEVPLG--VA-AD-ANK----LG-TIALKPDPADGTA-DI   74
1hpwa.pdb              34  -----G-SCPAN-T---------AATAG--IEKDTDINGKYVA-KVTTGG-TAAA-SGGC   72
2pil.pdb               50  YYLNHGKWPENN-T---------SAG--VAPPS-DIKGK--YVKEVEVKN--G-----VV   87
                                  s   n t          ag          k        v  k   a       

1dzoa.pdb              75  TLTFTMGGAG------PKNKGKIITLTRTAA--D-GLWKCTS-----------------D  108
1hpwa.pdb              73  TIVATMKASDVATPLR----GKTLTLTLGNADKGSYTWACTS-----------------N  111
2pil.pdb               88  TATMLSSGVN------NEIKGKKLSLWARRE-NGSVKWFCGQPVTRTDDDTVADAKDGKE  140
                           T t tm g            GK ltLt   a  g   W Cts                  

1dzoa.pdb             109  QDEQ-FI-PKGCSR---------  120
1hpwa.pdb             112  ADNKYLP-KTCQT-ATTTTP---  129
2pil.pdb              141  IDTK-HLPSTCRD-NF----DAK  157
                            D k     tc            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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