################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:06:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/porin.html
################################################################################################
#====================================
# Aligned_structures: 4
#   1: 1pho.pdb
#   2: 1prn.pdb
#   3: 2omf.pdb
#   4: 2por.pdb
#
# Length:        441
# Identity:       12/441 (  2.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     47/441 ( 10.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          231/441 ( 52.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1pho.pdb                1  AEIYNKDGNKLDVYGKVKAMHYMSD--N----AS-K--DGDQSYIRFGFKGETQINDQLT   51
1prn.pdb                1  ---------EISLNGYGRFGLQYVEDR---GV--GLEDTIISSRLRINIVGTTETDQGVT   46
2omf.pdb                1  AEIYNKDGNKVDLYGKAVGLHYFSKGNGEN-SYG-G--NGDMTYARLGFKGETQINSDLT   56
2por.pdb                1  ---------EVKLSGDARMGVMYNGDD---------WNFSSR--SRVLFTMSGTTDSGLE   40
                                       l G                              R  f g t     lt

1pho.pdb               52  GYGRWEAEFAGNKAESDT---AQQ---------KTRLA-FAGLKYKDLGSFDYGRNLGAL   98
1prn.pdb               47  FGAKLRMQWDDGDA---F---AGTA--------GN--AAQFWTSY-NGVTVSVGNVDTAF   89
2omf.pdb               57  GYGQWEYNFQGNNSEGA-DAQTGN---------KTRLA-FAGLKYADVGSFDYGRNYGVV  105
2por.pdb               41  FGASFKAH-----------------ESVGAETGED--G-TVFLSG-AFGKIEMGDALGAS   79
                                                                a    l y   g    G   ga 

1pho.pdb               99  YDVEAWT------DMFPEFG---GDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTL  149
1prn.pdb               90  DSVALTYD----SEMGYEAS---SF-GDAQ-SSFFAYNSKYD------------------  122
2omf.pdb              106  YDALGYT------DMLPEFG---GD-TAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAV  155
2por.pdb               80  EAL-----FGDLYEVGYTDLDDRGG-NDIP-YLTGDER----------------------  110
                                         m  e     g                                    

1pho.pdb              150  QYQGKNENRDVKKQ--NGDGFGTSLTYDFGGSDFAISGAYTNSD-R----TNEQNLQSRG  202
1prn.pdb              123  ---ASGA---------LDNYNGIAVTYSIS-GVNLYLSYVDPD----QTVD-SSL-----  159
2omf.pdb              156  QYLGKNERDTARRS--NGDGVGGSISYEYE-GFGIVGAYGAADRTN----L-QEAQP-LG  206
2por.pdb              111  --------------LTAEDNPVLLYTYSAG-AFSVAASMSD-G---KVGE----------  141
                                             d  g   tY                                 

1pho.pdb              203  TGKRA------EAWATGLKYD-ANNIYLATFYSET-RKMTPIT-------GG------FA  241
1prn.pdb              160  ---V------TEEFGIAADW-SNDMISLAAAYTTD---------------------AGGI  188
2omf.pdb              207  NG-KK-----AEQWATGLKY-DANNIYLAANYGETRN-ATPI-TNKFTNTSG------FA  251
2por.pdb              142  -----TSEDDAQEMAVAAAY-TFGNYTVGLGYEKI-----------------DSPDTAL-  177
                                      e  a    y    ni la  Y                            

1pho.pdb              242  N--KTQNFEAVAQYQFDFGLRPSLGYVL--SKGKDI-EGI------------------GD  278
1prn.pdb              189  V--DNDIAFVGAAYKFNDAGTVGLNWYD--NGL----STA------------------GD  222
2omf.pdb              252  N--KTQDVLLVAQYQFDFGLRPSIAYTK--SKAKDV-EGI------------------GD  288
2por.pdb              178  -MADMEQLELAAIAKFG-ATNVKAYYADGELDR---DF--ARAVFDLTPVAAAATAVDHK  230
                                      A y F         y                                gd

1pho.pdb              279  EDLV----------------------------NYIDVGATYYFNKNMSAFVDYKINQLDS  310
1prn.pdb              223  QVT-LYGNYAFGATTVRAYVSDIDRA-GAD--TAYGIGADYQFAEGVKVSGSVQSG-FA-  276
2omf.pdb              289  VDLV----------------------------NYFEVGATYYFNKNMSTYVDYIINQIDS  320
2por.pdb              231  AYG-LSVDSTFGATTVGGYVQVLDI-DTIDDVTYYGLGASYDLGGGASIVGGIADN-DL-  286
                                                            y   GA Y f    s       n    

1pho.pdb              311  DNKLNI-NNDDIVAVGMTYQF  330
1prn.pdb              277  --------NETVADVGVRFDF  289
2omf.pdb              321  DNKLGV-GSDDTVAVGIVYQF  340
2por.pdb              287  ------PNSDMVADLGVKFKF  301
                                    d    vG    F


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################