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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:06:35 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/pot.html
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#====================================
# Aligned_structures: 3
#   1: 1a1yi.pdb
#   2: 1cis.pdb
#   3: 1csei.pdb
#
# Length:         67
# Identity:       17/ 67 ( 25.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     57/ 67 ( 85.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            5/ 67 (  7.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a1yi.pdb               1  -KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTI--VTMEYRIDRVRLFVD-KLDNI   56
1cis.pdb                1  MKTEWPELVGKSVEEAKKVILQDKPEAQIIVLEKQAVDNAYAEYRIDRVRLAVD-KLDNI   59
1csei.pdb               1  --KSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSP--VTLDLRYNRVRVFYNPGTNVV   56
                             tewPElVGKsVeeAkkvilqdkPeaqiivLp g    vt eyRidRVRlfvd kldni

1a1yi.pdb              57  AEVPRVG   63
1cis.pdb               60  AQVPRVG   66
1csei.pdb              57  NHVPHVG   63
                           a VPrVG


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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