################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:37:50 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/prc.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1aij.pdb
#   2: 1prc.pdb
#
# Length:        879
# Identity:      403/879 ( 45.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    403/879 ( 45.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           76/879 (  8.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aij.pdb                1  ALLSFERKYRVPGGTLVGGNLFDFWVGPFYVGFFGVATFFFAALGIILIAWSAVLQGTWN   60
1prc.pdb                1  ALLSFERKYRVRGGTLIGGDLFDFWVGPYFVGFFGVSAIFFIFLGVSLIGYAASQGPTWD   60
                           ALLSFERKYRV GGTL GG LFDFWVGP  VGFFGV   FF  LG  LI   A    TW 

1aij.pdb               61  PQLISVYPPALEYGLGGAPLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFA  120
1prc.pdb               61  PFAISINPPDLKYGLGAAPLLEGGFWQAITVCALGAFISWMLREVEISRKLGIGWHVPLA  120
                           P  IS  PP L YGLG APL  GG WQ IT CA GAF SW LREVEI RKLGIG H P A

1aij.pdb              121  FAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFF  180
1prc.pdb              121  FCVPIFMFCVLQVFRPLLLGSWGHAFPYGILSHLDWVNNFGYQYLNWHYNPGHMSSVSFL  180
                           F   I     L  FRP   G WG AFPYGI  HLDWV N GY Y N HYNP HM   SF 

1aij.pdb              181  FTNALALALHGALVLSAANPEKGKEMRTPDHEDTFFRDLVGYSIGTLGIHRLGLLLSLSA  240
1prc.pdb              181  FVNAMALGLHGGLILSVANPGDGDKVKTAEHENQYFRDVVGYSIGALSIHRLGLFLASNI  240
                           F NA AL LHG L LS ANP  G    T  HE   FRD VGYSIG L IHRLGL L    

1aij.pdb              241  VFFSALCMIITGTIWFDQWVDWWQWWVKLPWWANIPGGINGAEYQ----NIFSQVQVRGP  296
1prc.pdb              241  FLTGAFGTIASGPFWTRGWPEWWGWWLDIPFWS------------ADYQTIYTQIQARGP  288
                               A   I  G  W   W  WW WW   P W                  I  Q Q RGP

1aij.pdb              297  ADLGMTEDVNLANRSGV-GPFSTLLGWFGNAQLGPIYLGSLGVLSLFSGLMWFFTIGIWF  355
1prc.pdb              289  HITVSGEW-GDNDRVG-KPFYSYWLGKIGDAQIGPIYLGASGIAAFAFGSTAILIILFNM  346
                                 E      R G     S  LG  G AQ GPIYLG  G      G      I    

1aij.pdb              356  WYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAPLKEGGLWLIASFFMFVAVWSWWGRTY  415
1prc.pdb              347  AAEVHFDPLQFFRQFFWLGLYPPKAQYGMG-IPPLHDGGWWLMAGLFMTLSLGSWWIRVY  405
                                  P  F R  F   L PP   YG     PL  GG WL A  FM     SWW R Y

1aij.pdb              416  LRAQALGMGKHTAWAFLSAIWLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHG  475
1prc.pdb              406  SRARALGLGTHIAWNFAAAIFFVLCIGCIHPTLVGSWSEGVPFGIWPHIDWLTAFSIRYG  465
                            RA ALG G H AW F  AI      G I P L GSWSE VP GI  H DW   FS   G

1aij.pdb              476  NLFYNPFHGLSIAFLYGSALLFAMHGATILAVSRFGGERELEQIADRGTAAERAALFWRW  535
1prc.pdb              466  NFYYCPWHGFSIGFAYGCGLLFAAHGATILAVARFGGDREIEQITDRGTAVERAALFWRW  525
                           N  Y P HG SI F YG  LLFA HGATILAV RFGG RE EQI DRGTA ERAALFWRW

1aij.pdb              536  TMGFNATMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYVWGQN-H------------  582
1prc.pdb              526  TIGFNATIESVHRWGWFFSLMVMVSASVGILLTGTFVDNWYLWCVKHGAAPDYPAYLPAT  585
                           T GFNAT E  HRW       V      GILL GT VDNWY W                 

1aij.pdb              583  ---------------------DLASLAIYSFWIFLAGLIYY-LQTENMREGYPLEN-ED-  618
1prc.pdb              586  PDPASLPGAPKMYHGALAQHLDIAQLVWYAQWLVIWTVVLLYLRREDRREGYPLVEPLGL  645
                                                D A L  Y  W          L  E  REGYPL      

1aij.pdb              619  --GTPAANQGPF--PLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTG  674
1prc.pdb              646  VKLAPEDGQ---VYELPYPKTFVLPHG-GTVTVPRRRPETRELKLAQTDGFEGAPLQPTG  701
                               P   Q      LP PKTF LPHG GT TVP    E R   LA T   EG P  PTG

1aij.pdb              675  DPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSA-GKNPIGLPVRGCDLEIA  733
1prc.pdb              702  NPLVDAVGPASYAERAEVVDATVDGKAKIVPLRVATDFSIAEGDVDPRGLPVVAADGVEA  761
                            P  D VGPAS   R         G  KI P   A  F        P GLPV   D   A

1aij.pdb              734  GKVVDIWVDIPEQMARFLEVEL-KDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIK  792
1prc.pdb              762  GTVTDLWVDRSEHYFRYLELSVAGSARTALIPLGFCDVKKDKIVVTSILSEQFANVPRLQ  821
                           G V D WVD  E   R LE        T L P     V      V    S  FA  P   

1aij.pdb              793  SPTEVTLLEEDKICGYVAGGLMYAAPKRKSVV-AAML--  828
1prc.pdb              822  SRDQITLREEDKVSAYYAGGLLYATP------ERAESLL  854
                           S    TL EEDK   Y AGGL YA P        A    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################