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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:35:27 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/pro_aminopeptidase.html
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#====================================
# Aligned_structures: 2
#   1: 1azwa.pdb
#   2: 1qtra.pdb
#
# Length:        316
# Identity:      179/316 ( 56.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    179/316 ( 56.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            5/316 (  1.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1azwa.pdb               1  M-RTLYPEITPYQQGSLKVDDRHTLYFEQCGNPHGKPVVMLHGGPGGGCNDKMRRFHDPA   59
1qtra.pdb               1  -LRGLYPPLAAYDSGWLDTGDGHRIYWELSGNPNGKPAVFIHGGPGGGISPHHRQLFDPE   59
                             R LYP    Y  G L   D H  Y E  GNP GKP V  HGGPGGG     R   DP 

1azwa.pdb              60  KYRIVLFDQRGSGRSTPHADLVDNTTWDLVADIERLRTHLGVDRWQVFGGSWGSTLALAY  119
1qtra.pdb              60  RYKVLLFDQRGCGRSRPHASLDNNTTWHLVADIERLREMAGVEQWLVFGGSWGSTLALAY  119
                            Y   LFDQRG GRS PHA L  NTTW LVADIERLR   GV  W VFGGSWGSTLALAY

1azwa.pdb             120  AQTHPQQVTELVLRGIFLLRRFELEWFYQEGASRLFPDAWEHYLNAIPPVERADLMSAFH  179
1qtra.pdb             120  AQTHPERVSEMVLRGIFTLRKQRLHWYYQDGASRFFPEKWERVLSILSDDERKDVIAAYR  179
                           AQTHP  V E VLRGIF LR   L W YQ GASR FP  WE  L      ER D   A  

1azwa.pdb             180  RRLTSDDEATRLAAAKAWSVWEGATSFLHVDEDFVTGHEDAHFALAFARIENHYFVNGGF  239
1qtra.pdb             180  QRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGED-DFALAFARIENHYFTHLGF  238
                            RLTS D    L AAK WSVWEG T  L          ED  FALAFARIENHYF   GF

1azwa.pdb             240  FEVEDQLLRDAHRIADIPGVIVHGRYDVVCPLQSAWDLHKAWPKAQLQISPASGHSAFEP  299
1qtra.pdb             239  LESDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWPEAELHIVEGAGHSYDEP  298
                            E  DQLLR    I  IP VIVHGRYD  C  Q AWDL KAWP A L I    GHS  EP

1azwa.pdb             300  ENVDALVRATDGFA--  313
1qtra.pdb             299  GILHQLMIATDRFAGK  314
                                L  ATD FA  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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